Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013432.1 Corchorus olitorius cultivar O-4 contig13465, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7600
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:4043 original size:24 final size:24

Alignment explanation


    Indices: 4011--4068  Score: 80
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       4001 AATGGGAATC

                      *             
       4011 GGTGGAGGAATATTCCGATCCTGA
          1 GGTGGAGGAACATTCCGATCCTGA

                     * *       *    
       4035 GGTGGAGGAGCGTTCCGATTCTGA
          1 GGTGGAGGAACATTCCGATCCTGA

                      
       4059 GGTGGAGGAA
          1 GGTGGAGGAA

       4069 GTGCAGGTGG


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   29  1.00

ACGTcount: A:0.22, C:0.14, G:0.41, T:0.22


Consensus pattern (24 bp):   
GGTGGAGGAACATTCCGATCCTGA

Found at i:7565 original size:2 final size:2

Alignment explanation


    Indices: 7558--7600  Score: 86
    Period size: 2  Copynumber: 21.5  Consensus size: 2

       7548 GTAAAATAAG

                                                                          
       7558 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

             
       7600 A
          1 A


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.