Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013437.1 Corchorus olitorius cultivar O-4 contig13470, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1908
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:1311 original size:21 final size:21

Alignment explanation


    Indices: 1286--1332  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       1276 AAAAAGTCAA

                     *    *      
       1286 CAAACCGAACCTG-TCCAACC
          1 CAAACCGAAACTGACCCAACC

                                  
       1306 CGAAACCGAAACTGACCCAACC
          1 C-AAACCGAAACTGACCCAACC

                 
       1328 CAAAC
          1 CAAAC

       1333 ATACCCGAAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 3
        0.82            0.07        0.11

Matches are distributed among these distances:
  20    1  0.04
  21   15  0.65
  22    7  0.30

ACGTcount: A:0.40, C:0.43, G:0.11, T:0.06


Consensus pattern (21 bp):   
CAAACCGAAACTGACCCAACC

Found at i:1373 original size:16 final size:16

Alignment explanation


    Indices: 1352--1395  Score: 79
    Period size: 16  Copynumber: 2.8  Consensus size: 16

       1342 TTTTTTGGGT

                            
       1352 ACCCGAACCCGAAATG
          1 ACCCGAACCCGAAATG

                      *     
       1368 ACCCGAACCCAAAATG
          1 ACCCGAACCCGAAATG

                        
       1384 ACCCGAACCCGA
          1 ACCCGAACCCGA

       1396 TCAACCCGAC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   26  1.00

ACGTcount: A:0.39, C:0.41, G:0.16, T:0.05


Consensus pattern (16 bp):   
ACCCGAACCCGAAATG
Done.