Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013438.1 Corchorus olitorius cultivar O-4 contig13471, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27505

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1116--1172
15
3.6
15
75
17
53
40
36
15
7
1.75
5888--5916
2
14.5
2
100
0
58
48
0
0
51
1.00
7280--7342
34
1.9
33
87
6
92
22
17
30
30
1.96
8263--8310
24
2.0
24
100
0
96
37
33
8
20
1.83
8263--8301
14
3.1
14
72
27
50
38
33
7
20
1.81
9721--9788
31
2.2
31
92
2
111
55
7
5
30
1.51
9833--9907
28
2.7
28
78
13
77
42
5
17
34
1.72
12993--13044
22
2.4
22
87
3
70
19
50
19
11
1.77
14913--14942
11
2.7
11
94
0
51
40
6
20
33
1.78
14923--14959
19
2.1
17
90
10
56
40
5
21
32
1.76
19529--19563
15
2.2
16
90
5
54
71
0
25
2
1.00
19610--19653
19
2.3
19
88
4
61
31
15
0
52
1.44
26232--26322
28
3.2
28
90
3
139
38
26
17
17
1.92
26720--27138
36
11.8
36
92
1
704
31
22
17
28
1.96
26720--27138
71
5.9
72
92
1
704
31
22
17
28
1.96
26715--27138
107
4.0
106
95
1
735
31
22
16
29
1.96

Tables:   1

The End!