Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013452.1 Corchorus olitorius cultivar O-4 contig13485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36907

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2542--2591
15
3.3
15
91
0
73
18
26
14
42
1.87
3413--3554
49
3.0
47
82
9
169
50
5
16
27
1.67
7656--7793
34
3.8
36
84
10
158
38
18
13
29
1.89
9016--9045
16
1.9
15
93
6
51
40
36
3
20
1.69
9004--9045
15
2.8
15
82
17
52
35
40
2
21
1.66
14207--14244
19
2.0
19
100
0
76
68
10
0
21
1.19
15307--15461
77
2.0
77
100
0
310
31
24
16
27
1.96
26474--26546
28
2.6
28
100
0
146
32
17
2
46
1.63
31894--31929
12
3.1
12
96
4
65
16
33
33
16
1.92
36009--36041
15
2.1
16
94
5
59
54
6
18
21
1.64
36397--36435
2
19.5
2
83
0
51
53
0
0
46
1.00

Tables:   1

The End!