Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013454.1 Corchorus olitorius cultivar O-4 contig13487, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14643
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:10997 original size:11 final size:11

Alignment explanation


    Indices: 10981--11005  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

      10971 GTTTGGTGAA

                       
      10981 TTTTGTTTTTT
          1 TTTTGTTTTTT

                       
      10992 TTTTGTTTTTT
          1 TTTTGTTTTTT

               
      11003 TTT
          1 TTT

      11006 CTTAAAATTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92


Consensus pattern (11 bp):   
TTTTGTTTTTT
Done.