Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013455.1 Corchorus olitorius cultivar O-4 contig13488, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56035

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
257--283
12
2.2
12
100
0
54
22
7
7
62
1.46
8--2513
333
7.7
328
84
6
3064
34
17
15
33
1.91
14029--14069
5
8.0
5
91
2
55
82
0
17
0
0.66
30372--30422
27
1.9
26
88
4
75
21
9
3
64
1.40
33609--33633
2
12.5
2
100
0
50
48
0
0
52
1.00
39823--39874
26
2.0
26
92
0
86
28
17
1
51
1.56
44160--44192
7
4.7
7
100
0
66
15
24
45
15
1.84
49311--49358
6
8.0
6
92
0
78
37
12
0
50
1.41
49311--49358
24
2.0
24
100
0
96
37
12
0
50
1.41
52511--52550
21
1.9
21
84
0
53
12
45
20
22
1.84
53262--53302
10
4.1
10
80
0
55
7
41
41
9
1.66
53253--53300
20
2.3
21
89
3
71
8
41
43
6
1.60
54376--54522
73
2.0
73
100
0
294
42
10
19
27
1.84

Tables:   1

The End!