genome.fa.s13456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013456.1 Corchorus olitorius cultivar O-4 contig13489, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  240106

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1267--1305	6	6.5	6	100	0	78	82	0	0	17	0.68
13546--13621	37	2.1	37	100	0	152	46	21	13	19	1.84
18092--18139	17	2.7	18	78	12	55	64	0	2	33	1.05
25176--25201	6	4.3	6	100	0	52	50	30	19	0	1.48
28545--28577	17	2.0	17	88	5	50	45	27	18	9	1.79
29241--29289	24	2.1	23	92	7	82	51	6	8	34	1.57
35510--36542	321	3.2	318	82	5	1084	36	15	14	32	1.89
36707--42746	322	18.8	321	84	4	7153	34	17	15	32	1.92
36707--42746	645	9.4	639	83	4	7051	34	17	15	32	1.92
42745--44982	322	7.0	321	89	3	3210	34	17	16	31	1.92
42745--44982	643	3.5	643	91	2	3577	34	17	16	31	1.92
45948--45984	15	2.4	16	82	13	51	54	0	0	45	1.00
46391--46467	38	2.0	38	94	0	136	28	6	18	46	1.73
49102--49158	30	1.9	30	92	0	96	24	10	38	26	1.88
57187--57283	16	6.1	16	69	17	76	29	22	13	34	1.92
57189--57233	14	3.1	14	87	6	63	28	22	17	31	1.97
57203--57302	50	2.0	49	92	3	166	32	22	10	36	1.87
89842--89878	16	2.2	18	85	9	51	54	10	10	24	1.67
92899--92953	18	2.8	20	78	18	62	47	5	16	30	1.69
95607--95631	7	3.6	7	100	0	50	0	12	0	88	0.53
97530--97554	5	5.0	5	100	0	50	0	0	60	40	0.97
97677--97712	8	4.6	8	93	6	65	47	13	13	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100836--100917	38	2.1	38	97	2	155	46	9	23	20	1.80
101439--101504	25	2.6	26	76	11	66	57	1	3	37	1.23
102036--102060	6	4.2	6	100	0	50	32	36	16	16	1.90
104004--104067	31	2.1	31	93	0	110	28	6	18	46	1.73
107549--107583	2	17.5	2	100	0	70	0	0	48	51	1.00
118938--118962	2	12.5	2	100	0	50	0	0	52	48	1.00
125187--125226	14	3.0	14	86	13	50	65	0	0	35	0.93
125205--125229	3	8.3	3	100	0	50	68	0	0	32	0.90
133456--133486	15	2.1	14	94	5	53	38	12	19	29	1.89
144531--144565	7	5.3	7	96	3	56	0	22	0	77	0.78
144590--144622	13	2.4	14	95	5	59	0	15	0	84	0.61
144590--144622	7	4.9	7	85	7	50	0	15	0	84	0.61
144586--144623	14	2.7	15	88	12	62	0	15	0	84	0.63
144660--144696	2	20.0	2	84	15	53	48	0	0	51	1.00
144660--144696	13	2.9	13	84	15	51	48	0	0	51	1.00
144660--144696	15	2.5	15	91	4	58	48	0	0	51	1.00
147344--147371	3	9.3	3	100	0	56	0	32	0	67	0.91
151719--151743	12	2.1	12	100	0	50	0	8	0	92	0.40
157569--157593	2	12.5	2	100	0	50	48	0	52	0	1.00
157835--157863	6	4.8	6	100	0	58	48	34	17	0	1.47
174603--174637	5	7.0	5	96	0	61	62	0	0	37	0.95
186464--186494	15	2.1	15	94	5	55	0	3	64	32	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187160--187190	6	5.2	6	100	0	62	16	16	32	35	1.91
188673--188698	2	13.0	2	100	0	52	50	0	0	50	1.00
191607--191768	31	5.3	31	79	4	193	35	24	24	15	1.94
191649--191708	30	2.1	27	82	11	68	40	23	25	11	1.88
191627--191798	61	2.9	61	80	6	181	36	25	24	13	1.93
195823--195861	3	13.0	3	100	0	78	33	0	0	66	0.92
200410--200509	20	5.0	20	90	3	148	29	9	30	32	1.88
201067--201128	30	2.1	30	96	0	115	45	4	24	25	1.73
202371--204200	658	2.8	656	88	4	2797	33	15	15	35	1.89
202375--204200	331	5.6	331	89	2	2765	33	15	15	35	1.89
204398--206838	330	7.4	330	93	2	4101	32	16	15	34	1.91
204398--206838	664	3.7	660	93	2	4126	32	16	15	34	1.91
204398--206838	997	2.5	979	94	2	4183	32	16	15	34	1.91
206725--207062	112	3.0	112	96	0	606	28	25	15	31	1.95
207253--208482	331	3.7	331	92	1	1957	32	16	15	34	1.91
208194--208771	289	2.0	290	92	2	957	32	17	15	34	1.92
208484--211373	330	8.7	329	80	5	2624	32	15	15	36	1.89
208483--211373	664	4.4	665	78	6	2615	32	15	15	36	1.89
218633--218732	32	3.2	32	66	11	100	37	17	3	43	1.64
218668--218758	28	3.1	28	64	11	74	34	15	6	43	1.72
218636--218758	60	2.0	60	100	0	246	35	16	4	43	1.69
235364--235425	25	2.6	24	87	5	81	59	4	6	29	1.43

Tables:   1

The End!