Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013457.1 Corchorus olitorius cultivar O-4 contig13490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83568

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9714--9749
18
2.0
18
88
0
54
61
2
5
30
1.33
10834--10886
16
3.5
16
75
15
67
37
20
7
33
1.81
10828--10887
29
2.1
29
100
0
120
36
21
6
35
1.80
11516--11597
41
2.0
41
92
0
137
18
13
20
47
1.82
13566--13599
7
4.9
7
100
0
68
14
29
14
41
1.86
15347--15400
23
2.4
22
81
12
56
61
16
3
18
1.49
18423--18526
2
51.5
2
98
1
199
0
49
0
50
1.07
21518--21567
3
16.7
3
78
15
50
58
2
4
36
1.29
21589--21672
35
2.4
35
94
2
143
26
0
16
57
1.40
25200--25245
7
6.6
7
94
0
83
28
0
41
30
1.56
31374--31413
11
3.7
11
86
3
55
2
2
12
82
0.87
34624--34698
36
2.2
36
85
7
102
53
2
10
33
1.50
41596--41624
2
14.5
2
100
0
58
0
48
0
51
1.00
52253--52287
15
2.3
15
90
9
54
31
5
37
25
1.80
68020--68058
15
2.9
14
88
11
55
35
35
15
12
1.86
81705--81731
5
5.4
5
100
0
54
40
18
0
40
1.51
83137--83161
13
1.9
13
100
0
50
36
8
0
56
1.29

Tables:   1

The End!