Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013459.1 Corchorus olitorius cultivar O-4 contig13492, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16185

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--51
15
3.1
15
81
3
51
43
2
2
52
1.24
740--789
25
2.0
25
85
11
68
68
4
8
20
1.32
2620--2663
16
2.6
17
85
7
63
25
0
18
56
1.41
4372--4430
25
2.4
25
77
11
66
25
28
25
20
1.99
7337--8658
336
3.9
334
84
8
1684
33
18
13
35
1.89
9783--10467
146
4.9
145
80
8
667
18
24
21
36
1.95
9783--10467
140
4.9
140
78
10
657
18
24
21
36
1.95
9878--10412
286
1.9
286
83
7
697
17
25
20
35
1.95
10494--10559
32
2.1
32
94
0
114
34
10
30
24
1.89
10922--12158
332
3.7
331
85
3
1646
31
16
17
35
1.92
12349--13247
331
2.7
331
85
3
1205
32
14
16
36
1.89
14684--14762
2
39.5
2
100
0
158
49
0
50
0
1.00

Tables:   1

The End!