Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013461.1 Corchorus olitorius cultivar O-4 contig13494, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40090

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1718--1767
18
2.8
18
90
0
82
30
0
28
42
1.56
1865--1939
24
3.1
24
86
0
114
45
28
16
10
1.80
11484--11559
36
2.1
36
100
0
152
48
15
14
21
1.80
12718--12756
14
2.9
13
80
3
51
53
2
2
41
1.28
12742--12995
122
2.0
128
90
6
403
50
1
10
37
1.49
13805--13835
15
2.1
15
100
0
62
61
12
6
19
1.53
13863--13897
14
2.5
14
90
0
61
68
0
8
22
1.16
20153--20180
10
2.8
10
100
0
56
0
0
7
92
0.37
22566--22596
7
4.6
7
96
4
55
0
9
0
90
0.46
22846--22966
60
2.0
60
100
0
242
31
19
23
26
1.98
24810--24984
88
2.0
88
95
0
314
44
3
13
38
1.60
25821--25880
31
1.9
31
100
0
120
43
6
8
41
1.61
28012--28071
27
2.2
28
90
3
95
51
5
23
20
1.66
28011--28072
28
2.2
29
85
8
92
53
4
22
19
1.64
33229--33321
40
2.3
40
100
0
186
38
22
7
31
1.82
33508--33564
29
2.0
29
92
0
96
40
15
22
21
1.91
35038--35124
29
2.9
30
75
5
95
35
18
10
35
1.85
36453--36477
12
2.1
12
100
0
50
24
0
24
52
1.48
38835--38859
12
2.1
12
100
0
50
52
24
0
24
1.48

Tables:   1

The End!