Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013464.1 Corchorus olitorius cultivar O-4 contig13497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63248

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
448--473
11
2.4
11
100
0
52
7
15
7
69
1.35
1233--1274
15
2.7
15
92
3
66
11
9
14
64
1.50
1630--1745
23
4.9
23
79
14
112
43
9
13
33
1.77
7411--7436
11
2.4
11
100
0
52
7
15
7
69
1.35
8196--8234
16
2.4
16
100
0
78
15
5
12
66
1.41
22415--22456
21
2.0
20
86
4
57
26
9
16
47
1.77
24490--24556
34
2.0
33
88
2
98
22
13
8
55
1.66
23927--24690
380
2.0
379
88
3
1151
39
11
9
40
1.73
25961--26197
66
3.6
66
78
6
203
35
8
18
37
1.82
25966--26193
22
10.3
22
71
9
106
35
8
17
37
1.81
26201--26664
22
20.9
22
69
13
137
38
10
15
35
1.81
26496--26661
44
3.8
44
76
3
165
42
11
12
34
1.78
26675--27014
22
15.9
21
68
16
173
38
9
17
34
1.82
26927--26987
25
2.5
24
80
12
72
39
8
18
34
1.80
26979--27025
22
2.1
22
92
0
76
34
8
17
40
1.79
31088--31139
19
2.8
20
74
11
56
48
1
0
50
1.12
33049--33099
22
2.3
22
83
6
59
43
9
7
39
1.67
48166--48217
19
2.8
20
74
11
56
48
1
0
50
1.12
49684--49734
23
2.2
23
100
0
102
37
35
7
19
1.81
57883--57990
53
2.0
53
96
0
198
30
18
23
27
1.98
59777--59814
19
2.0
20
89
5
60
34
7
0
57
1.28
61962--61997
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!