Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013467.1 Corchorus olitorius cultivar O-4 contig13500, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52161

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118--201
43
1.9
43
82
4
105
53
3
4
38
1.39
2304--2355
15
3.5
14
86
7
68
78
0
17
3
0.89
2304--2355
7
7.0
7
86
8
68
78
0
17
3
0.89
8893--8979
29
2.9
29
79
6
86
35
19
20
24
1.96
9483--9561
24
3.3
24
100
0
158
15
7
39
37
1.76
15307--15444
33
4.2
33
80
7
129
44
21
8
25
1.81
16022--16053
15
2.1
15
100
0
64
15
6
28
50
1.68
16871--16904
10
3.4
10
91
0
50
11
0
2
85
0.71
17018--17057
17
2.2
17
86
8
53
45
5
22
27
1.73
25080--25125
22
2.1
22
87
0
65
28
26
8
36
1.86
35846--35884
20
1.9
20
84
5
51
30
30
5
33
1.79
38370--38413
16
2.8
16
96
0
79
38
40
13
6
1.71
38403--38446
16
2.6
17
83
16
65
25
50
20
4
1.67
38889--38960
31
2.3
31
75
17
78
26
4
8
61
1.43
39229--39278
8
6.4
8
95
4
93
38
0
0
62
0.96
39412--39438
8
3.4
8
100
0
54
37
0
0
62
0.95
39572--39629
23
2.5
23
88
5
82
27
46
20
5
1.72
39619--39703
16
5.3
16
88
5
136
41
38
14
5
1.70
41177--41205
15
2.0
15
93
6
51
13
3
0
82
0.79
51795--51940
33
4.5
31
78
10
123
42
21
8
27
1.82

Tables:   1

The End!