Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013468.1 Corchorus olitorius cultivar O-4 contig13501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14557

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4019--4049
16
1.9
16
93
0
53
54
6
0
38
1.26
4112--4205
45
2.2
43
87
11
131
39
22
4
34
1.74
5952--6332
211
1.8
210
86
4
552
44
14
17
23
1.86
6629--6829
75
2.7
75
82
3
217
23
25
13
37
1.91
7486--7518
17
2.0
17
88
5
50
3
33
3
60
1.27
7629--7911
140
2.0
140
90
1
451
22
16
22
37
1.94
12207--12266
28
2.1
28
84
6
77
36
13
18
31
1.89
13033--13066
11
3.0
11
91
4
50
0
14
0
85
0.60
13037--13080
21
2.1
21
91
0
70
0
20
0
79
0.73
13039--13080
10
4.1
10
93
3
66
0
19
0
80
0.70
14074--14117
23
1.9
23
86
9
63
47
9
0
43
1.35

Tables:   1

The End!