Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013469.1 Corchorus olitorius cultivar O-4 contig13502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62681

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
257--298
21
2.2
19
87
12
59
16
0
28
54
1.42
3833--3888
21
2.7
21
85
0
76
19
10
28
41
1.85
3767--3974
109
1.9
109
93
1
355
22
14
22
40
1.90
3942--3985
21
2.0
22
91
8
72
18
11
27
43
1.84
4117--4369
100
2.5
99
89
1
380
41
24
9
24
1.83
4055--4288
21
11.3
21
78
9
169
41
23
8
25
1.84
4316--4369
21
2.5
22
81
6
74
42
24
9
24
1.83
4694--4762
21
3.2
21
91
2
102
42
24
13
20
1.87
7178--7228
3
17.0
3
100
0
102
33
0
0
66
0.92
7729--7777
22
2.3
22
85
3
64
26
14
10
48
1.75
7737--7778
22
1.9
22
95
0
75
28
11
14
45
1.80
7803--7925
61
2.0
61
100
0
246
32
19
10
37
1.86
9314--9347
17
2.0
17
100
0
68
35
11
11
41
1.78
9593--9645
18
3.0
18
86
2
72
56
16
24
1
1.50
11738--12105
67
5.5
66
82
9
365
22
19
16
41
1.90
11735--12065
136
2.5
133
82
6
375
21
19
16
43
1.88
11741--12104
202
1.8
201
81
8
461
22
18
16
42
1.89
12136--12297
66
2.5
65
79
9
159
25
22
14
37
1.93
14249--15035
383
2.0
389
90
5
1239
33
20
17
28
1.95
15194--15279
41
2.1
42
93
2
147
41
23
6
27
1.80
15520--15593
34
2.1
35
95
2
132
21
16
20
41
1.90
15635--15666
16
2.0
16
93
0
55
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15715--15756
15
3.1
14
87
12
61
50
0
0
50
1.00
18647--18720
36
2.1
36
97
0
139
29
9
27
33
1.88
30967--31007
21
2.0
21
85
9
57
17
19
7
56
1.64
31211--31247
2
18.5
2
94
0
65
51
45
0
2
1.15
31424--31462
12
3.2
12
85
0
51
41
0
0
58
0.98
33159--33193
2
17.0
2
88
5
52
45
5
0
48
1.26
33314--33492
93
1.9
93
91
0
295
33
13
2
49
1.57
34820--34857
16
2.2
17
86
9
51
5
31
0
63
1.17
38275--38336
19
3.4
18
74
22
51
56
0
4
38
1.21
39636--39676
21
1.9
22
85
5
57
9
14
29
46
1.77
41192--41282
38
2.4
38
90
0
137
34
9
13
42
1.77
42135--42184
3
16.7
3
95
0
91
0
32
2
66
1.03
45895--45932
2
19.5
2
94
5
69
50
0
0
50
1.00
50258--50309
3
17.3
3
91
0
86
63
1
0
34
1.06
51102--51132
6
5.2
6
92
0
53
48
29
19
3
1.64
57104--57134
11
2.8
11
100
0
62
38
6
45
9
1.63
60859--60900
15
2.7
15
92
3
66
11
9
14
64
1.50
61249--61297
24
2.1
22
85
7
62
44
4
12
38
1.61

Tables:   1

The End!