Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013473.1 Corchorus olitorius cultivar O-4 contig13506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75176

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9950--10868
457
2.0
457
96
0
1707
32
12
14
40
1.83
10912--10943
16
2.0
16
93
0
55
43
6
3
46
1.44
12061--12095
2
18.5
2
88
11
56
54
0
0
45
0.99
12058--12097
9
4.6
9
93
6
73
55
0
0
45
0.99
12975--13035
16
3.6
16
77
6
59
40
29
0
29
1.57
13092--13195
40
2.6
40
93
0
181
26
4
24
44
1.74
13372--13421
22
2.3
22
85
0
64
30
2
14
54
1.51
15491--15526
18
2.0
18
94
0
63
22
11
2
63
1.39
17918--17953
18
2.0
18
88
0
54
25
11
2
61
1.43
20437--20493
19
3.0
19
75
17
64
59
8
1
29
1.38
21669--21707
15
2.7
15
92
4
62
61
7
0
30
1.24
23847--23890
5
8.4
5
97
2
70
56
0
0
43
0.99
27313--27413
52
2.0
52
90
2
159
24
21
26
26
2.00
31613--31637
8
3.1
8
100
0
50
36
16
24
24
1.94
50933--50974
16
2.6
16
88
0
66
16
16
45
21
1.86
57043--57089
18
2.6
18
75
0
58
51
2
0
46
1.13
70920--70967
24
2.0
24
95
0
87
25
6
29
39
1.80

Tables:   1

The End!