Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013476.1 Corchorus olitorius cultivar O-4 contig13509, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4853
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Found at i:951 original size:7 final size:7

Alignment explanation


    Indices: 937--997  Score: 97
    Period size: 7  Copynumber: 8.9  Consensus size: 7

        927 TATGCATATG

                   
        937 CTAT-AT
          1 CTATAAT

                   
        943 CTATAAT
          1 CTATAAT

                   
        950 CTATAAT
          1 CTATAAT

                   
        957 CTATAAT
          1 CTATAAT

                   
        964 CTATAAT
          1 CTATAAT

                   
        971 CTATAAT
          1 CTATAAT

                   
        978 CTATAAT
          1 CTATAAT

             *     
        985 CCATAAT
          1 CTATAAT

             *    
        992 CCATAA
          1 CTATAA

        998 AGATACGTAA


Statistics
Matches: 53,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
   6    4  0.08
   7   49  0.92

ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39


Consensus pattern (7 bp):   
CTATAAT

Done.