Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013484.1 Corchorus olitorius cultivar O-4 contig13517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32720

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1797--1881
29
2.9
29
98
0
161
44
29
3
22
1.69
1937--2000
29
2.2
29
97
0
119
48
15
4
31
1.66
1953--1999
14
3.3
14
72
16
51
46
12
6
34
1.67
2941--3035
50
1.9
49
89
2
145
56
6
4
32
1.43
5633--5730
48
2.0
48
96
0
178
51
16
9
23
1.73
6115--6378
134
2.0
135
98
0
512
34
12
20
32
1.90
7372--7410
20
2.0
20
94
0
69
56
5
0
38
1.22
11762--11796
11
3.2
11
91
0
61
80
17
2
0
0.84
15207--15250
21
2.1
21
100
0
88
29
18
4
47
1.68
15406--15448
20
2.0
23
86
13
65
53
0
16
30
1.43
19267--19319
26
2.0
26
96
0
97
35
9
20
33
1.85
20478--20516
20
2.0
20
94
0
69
41
23
12
23
1.88
20658--21229
200
2.8
201
90
1
903
34
15
14
36
1.87
28618--28648
2
15.5
2
100
0
62
51
0
0
48
1.00
29017--29046
2
15.0
2
92
0
51
0
46
3
50
1.18
29965--30026
18
3.3
18
69
10
52
53
9
4
32
1.55
29961--30041
39
2.0
40
90
2
128
50
8
4
35
1.55
30155--30566
205
2.0
205
95
1
738
36
11
8
43
1.70
32342--32411
36
1.9
36
94
0
122
60
7
10
22
1.53

Tables:   1

The End!