Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013485.1 Corchorus olitorius cultivar O-4 contig13518, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2446
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36


Found at i:1073 original size:60 final size:57

Alignment explanation


    Indices: 980--1090  Score: 159
    Period size: 58  Copynumber: 1.9  Consensus size: 57

        970 ATCATGCCTC

                 *                                                     
        980 GGTCCTAAAACGTCTTTTTTAGGCATCTAATAAAAAAAACATGTCACTCGATAAGTCTT
          1 GGTCCGAAAACGTCTTTTTTAGGCATCTAAT--AAAAAACATGTCACTCGATAAGTCTT

                                  *            *           *    
       1039 GGTCCGAAAACGTCTTTTTTTATGCATCTAATAAAGAACATGTCACTTGATA
          1 GGTCCGAAAACGTC-TTTTTTAGGCATCTAATAAAAAACATGTCACTCGATA

       1091 TTTGATTAAG


Statistics
Matches: 47,  Mismatches: 4, Indels: 3
        0.87            0.07        0.06

Matches are distributed among these distances:
  58   18  0.38
  59   13  0.28
  60   16  0.34

ACGTcount: A:0.34, C:0.18, G:0.14, T:0.33


Consensus pattern (57 bp):   
GGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAACATGTCACTCGATAAGTCTT
Done.