Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013489.1 Corchorus olitorius cultivar O-4 contig13522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82859

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1640--1700
31
2.0
31
83
6
79
32
24
9
32
1.88
2523--2869
22
16.1
22
70
12
168
35
9
17
37
1.82
2605--2869
44
6.3
44
74
12
198
33
10
18
37
1.85
2688--2758
37
1.9
37
94
0
124
32
9
19
38
1.85
2645--2803
81
2.0
79
81
7
187
33
8
18
38
1.82
6532--6572
13
3.4
13
83
16
61
0
0
12
87
0.53
6534--6569
19
1.9
18
94
5
63
0
0
13
86
0.58
9112--9165
27
2.0
27
100
0
108
48
3
29
18
1.65
20443--20481
17
2.2
18
86
9
53
43
2
5
48
1.38
21968--22036
4
17.2
4
96
0
129
26
0
23
50
1.49
22580--22637
30
1.9
31
89
3
91
18
15
46
18
1.84
25117--25163
21
2.4
20
83
13
62
48
0
6
44
1.28
29812--29837
3
8.7
3
100
0
52
30
0
34
34
1.58
32352--32403
25
2.1
25
96
0
95
38
7
9
44
1.66
34570--34608
8
4.9
8
84
12
53
0
84
0
15
0.62
34579--34608
14
2.1
15
93
6
53
0
90
0
10
0.47
35669--35693
6
4.2
6
100
0
50
48
0
0
52
1.00
39830--39867
2
19.5
2
94
5
69
50
0
0
50
1.00
40360--40401
19
2.2
20
91
4
68
40
11
9
38
1.75
51538--51562
12
2.1
12
100
0
50
48
0
52
0
1.00
53850--53911
30
2.1
30
87
0
88
9
59
11
19
1.58
61035--61074
15
2.5
16
88
8
55
35
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63542--63673
36
3.5
38
79
9
155
44
0
3
52
1.16
63542--63695
73
2.1
72
92
3
256
42
0
3
53
1.22
63960--63989
15
2.0
15
100
0
60
40
6
0
53
1.27
65110--65689
286
2.0
291
89
3
884
24
15
16
43
1.87
71708--71737
2
15.0
2
100
0
60
0
50
0
50
1.00
73733--73783
3
19.0
3
77
22
60
62
0
0
37
0.95
73736--73793
5
11.6
5
81
18
68
60
0
1
37
1.07
73728--73795
28
2.3
30
83
16
88
58
0
1
39
1.07
73728--73795
8
7.7
9
84
12
72
58
0
1
39
1.07
76168--76200
16
2.1
16
94
0
57
36
3
12
48
1.56
76143--76290
56
2.6
58
91
3
237
32
10
14
41
1.81
76293--76323
16
1.9
16
100
0
62
35
6
12
45
1.68
78305--78345
21
2.0
21
95
0
73
9
9
39
41
1.71
79585--79609
6
4.2
6
100
0
50
68
0
16
16
1.22

Tables:   1

The End!