Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013493.1 Corchorus olitorius cultivar O-4 contig13526, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6535
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.31


Found at i:4283 original size:6 final size:6

Alignment explanation


    Indices: 4272--4302  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       4262 GTAGTATATC

                                                
       4272 AATTAT AATTAT AATTAT AATTAT AATTAT A
          1 AATTAT AATTAT AATTAT AATTAT AATTAT A

       4303 TGCAAGTGTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (6 bp):   
AATTAT

Done.