Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013495.1 Corchorus olitorius cultivar O-4 contig13528, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94800

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
676--2223
333
4.8
331
74
12
1363
35
17
14
32
1.91
214--2119
639
3.0
635
83
9
2385
35
18
15
31
1.92
7946--7982
12
3.2
11
92
7
56
0
10
2
86
0.67
7943--7982
15
2.7
15
88
3
55
0
12
2
85
0.71
19808--19832
6
4.2
6
100
0
50
16
0
36
48
1.46
25946--26077
65
2.0
66
95
1
239
32
21
12
33
1.91
28677--28703
7
3.9
7
100
0
54
14
11
59
14
1.62
30193--30225
8
4.1
8
100
0
66
39
12
12
36
1.80
30725--30756
2
17.0
2
87
12
50
53
0
0
46
1.00
32148--32180
7
4.7
7
100
0
66
27
30
15
27
1.96
34315--34358
13
3.5
13
87
6
65
47
0
4
47
1.22
40048--40083
13
2.8
12
88
12
54
86
0
13
0
0.58
41908--41949
20
2.0
21
90
4
68
9
11
11
66
1.44
76271--76357
42
2.0
43
86
4
122
33
12
25
28
1.92
78158--78201
3
14.7
3
90
9
72
63
0
0
36
0.95
84901--85166
30
8.9
30
85
4
331
33
34
22
9
1.86
85077--85200
63
2.0
63
81
0
149
33
34
20
10
1.87
85213--85280
30
2.3
30
94
0
118
29
33
22
14
1.94
85237--85308
30
2.4
30
83
0
81
31
34
22
11
1.89

Tables:   1

The End!