Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013496.1 Corchorus olitorius cultivar O-4 contig13529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73582
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:11218 original size:7 final size:7
Alignment explanation
Indices: 11206--11238 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
11196 GCTCAGGCAA
11206 TGAGTTT
1 TGAGTTT
11213 TGAGTTT
1 TGAGTTT
*
11220 TGAGTAT
1 TGAGTTT
11227 TGA-TTT
1 TGAGTTT
11233 TGAGTT
1 TGAGTT
11239 GAGCTCAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.18, C:0.00, G:0.27, T:0.55
Consensus pattern (7 bp):
TGAGTTT
Found at i:19160 original size:326 final size:334
Alignment explanation
Indices: 18552--19209 Score: 831
Period size: 332 Copynumber: 2.0 Consensus size: 334
18542 AAAATTGTCA
* * *
18552 ATTGATAAAGAAAATTCATAGTTTCACATTTATGGACATGAAAGATAGTAGATGGTAACAAGTTT
1 ATTGATAAAGAAAATTCATAATTACACATTTATGGACATGAAAGAGAGTAGATGGTAACAAGTTT
* * * *
18617 ATGTGGGTTGGTAAAAAATTAATATGAAATTCAATGCTGTAGACTTCCTGACAGCAGACATGTAT
66 ATATGGGTTGGTAAAAAATAAACATGAAATTCAATGCTGTAGACTTCCTGACAGCAGACATATAT
* * * *
18682 CTTAGGAGTTAGGACATAGCAAAATAGTGACCTTGACATTGTTTGTTGCACTGAAGGGGACTCCC
131 CTTAGGAG-CAGGA-ATAGCAAAATAGTGACCTAGACATTGTTAGTAGCACTGAAGGGGACTCCC
* *
18747 AAGAGTTTTGAAAGATATGACCAATCTTCGGATGAGGTTTTCCAACTTTAGATGGAGACACTTAT
194 AAGAGTTTTGAAACATATGACCAATCTTCGCATGAGGTTTTCCAACTTTAGATGGAGACACTTAT
** * *
18812 TCTGTGAATTTTCCATCTAAGAATTTTG-TTTCCTTCTGTCAGTTGGATGTGGATGGCCTTTTTA
259 TCCATGAATTCTCCATCTAAGAATTTTGTTTTCCTTCTGTCAGTTGGATGTGGATGGCATTTTTA
*
18876 GTCATGAGACT
324 GCCATGAGACT
* *
18887 ATTGTTAAAGAAAATTCATAATTACATATTTATGGACATGAAA-AGA-TAGATGGTAACAAGTTT
1 ATTGATAAAGAAAATTCATAATTACACATTTATGGACATGAAAGAGAGTAGATGGTAACAAGTTT
* * *
18950 ATATGGGTTGGT-AAAAATAAACATGAAATTTAATGCTTTAGATTTCCTGACAGCAGACATATAT
66 ATATGGGTTGGTAAAAAATAAACATGAAATTCAATGCTGTAGACTTCCTGACAGCAGACATATAT
* * * * *
19014 CTTAGGA-CA-G-A-GGCAAAATAGTGACCTAGACATTGTTAGTAGGACTGAAGGGG-TTTCTAA
131 CTTAGGAGCAGGAATAGCAAAATAGTGACCTAGACATTGTTAGTAGCACTGAAGGGGACTCCCAA
* * * * * *
19074 GGGTTTTTAAACATTTGACC-ATTTTCTCATGAGGTTTTCCAA-TCTTAGATGTG-TACACTTAT
196 GAGTTTTGAAACATATGACCAATCTTCGCATGAGGTTTTCCAACT-TTAGATG-GAGACACTTAT
*
19136 TCCATG-A-TCTCCATGTGACTAAGAATTTTGTTTTCCTTCTGTCAGTTGGATGTGGATGGGATT
259 TCCATGAATTCTCCA--T--CTAAGAATTTTGTTTTCCTTCTGTCAGTTGGATGTGGATGGCATT
19199 TTTAGCCATGA
320 TTTAGCCATGA
19210 AAATTGAAGA
Statistics
Matches: 281, Mismatches: 35, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
322 5 0.02
323 2 0.01
324 39 0.14
325 21 0.07
326 49 0.17
327 41 0.15
329 1 0.00
330 1 0.00
332 53 0.19
333 28 0.10
334 2 0.01
335 39 0.14
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34
Consensus pattern (334 bp):
ATTGATAAAGAAAATTCATAATTACACATTTATGGACATGAAAGAGAGTAGATGGTAACAAGTTT
ATATGGGTTGGTAAAAAATAAACATGAAATTCAATGCTGTAGACTTCCTGACAGCAGACATATAT
CTTAGGAGCAGGAATAGCAAAATAGTGACCTAGACATTGTTAGTAGCACTGAAGGGGACTCCCAA
GAGTTTTGAAACATATGACCAATCTTCGCATGAGGTTTTCCAACTTTAGATGGAGACACTTATTC
CATGAATTCTCCATCTAAGAATTTTGTTTTCCTTCTGTCAGTTGGATGTGGATGGCATTTTTAGC
CATGAGACT
Found at i:30549 original size:11 final size:11
Alignment explanation
Indices: 30523--30560 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
30513 TTCTGCTTCT
30523 GTTTTTGTTGA
1 GTTTTTGTTGA
30534 TGTTTTTGTTGA
1 -GTTTTTGTTGA
30546 GTTTGTTG-TGA
1 GTTT-TTGTTGA
30557 GTTT
1 GTTT
30561 CCAATATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.44
12 14 0.56
ACGTcount: A:0.08, C:0.00, G:0.29, T:0.63
Consensus pattern (11 bp):
GTTTTTGTTGA
Found at i:30714 original size:31 final size:29
Alignment explanation
Indices: 30692--30779 Score: 92
Period size: 29 Copynumber: 3.0 Consensus size: 29
30682 ATTGACAGAT
30692 TTTGTTAAGTAGAGGGACTCAATCGACACCAA
1 TTTGTTAAGTAGAGGGACTCAATCG--A-CAA
* *
30724 ATTG-TAAGTAGAGGGAC-CAAATTGACAA
1 TTTGTTAAGTAGAGGGACTC-AATCGACAA
30752 TTT-TTATAGTAGAGGGACTCAATCGACA
1 TTTGTTA-AGTAGAGGGACTCAATCGACA
30780 CCAAATTGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
28 7 0.15
29 19 0.40
30 2 0.04
31 17 0.35
32 3 0.06
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (29 bp):
TTTGTTAAGTAGAGGGACTCAATCGACAA
Found at i:33969 original size:6 final size:6
Alignment explanation
Indices: 33960--33986 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
33950 CTCCTTACTC
33960 GCCACA GCCACA GCCACA GCCACA GCC
1 GCCACA GCCACA GCCACA GCCACA GCC
33987 TGCAGCCTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.52, G:0.19, T:0.00
Consensus pattern (6 bp):
GCCACA
Found at i:37894 original size:6 final size:6
Alignment explanation
Indices: 37883--37916 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
37873 TACATCATAG
37883 TTTTCT TTTTCT TTTTCTT TTTTCT TTTT-T TTTT
1 TTTTCT TTTTCT TTTTC-T TTTTCT TTTTCT TTTT
37917 AAATTGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (6 bp):
TTTTCT
Found at i:37900 original size:12 final size:12
Alignment explanation
Indices: 37883--37916 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
37873 TACATCATAG
37883 TTTTCTTTTTCT
1 TTTTCTTTTTCT
37895 TTTTCTTTTTTCT
1 TTTTC-TTTTTCT
37908 TTTT-TTTTT
1 TTTTCTTTTT
37917 AAATTGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 5 0.24
13 11 0.52
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTTCTTTTTCT
Found at i:47922 original size:15 final size:15
Alignment explanation
Indices: 47904--47933 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
47894 TTCCTCTCTC
47904 TTTTTTTTTT-CTTT
1 TTTTTTTTTTCCTTT
47918 TTTTTTTTTTCCTTT
1 TTTTTTTTTTCCTTT
47933 T
1 T
47934 GGTCTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTTCCTTT
Found at i:72727 original size:330 final size:331
Alignment explanation
Indices: 72124--73580 Score: 2144
Period size: 330 Copynumber: 4.4 Consensus size: 331
72114 TTTTTTGGTA
72124 CCCTTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAA
1 CCCTTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAA
* * *
72189 AAAT-ATTTCGGTCAATTTTTGCAAAATTTTTGTTGAAATCGTGTA-TAAACCATCACGGTTTTT
66 AAATCTTTTGGGTCAATTTTT-CAAAATTTTTGCTGAAATCGTGTACT-AACCATCACGGTTTTT
* * * *
72252 GGCTAAAAACGC-TTCCGGGACTCCGACTCAGTTTTG-GATGATTTTTGGCGCCAAGACGCATTG
129 GGCTAAAAACGCGTTCCGAGACCCCGACTCAGTTTTGCG-TGATTTTTGGCACCAAGACTCATTG
* * * *
72315 AAATATCTATATTAATCTAACAAAATATCAGCCACAATGGATTTAAGGATTTGTTTTTACGATCA
193 AAATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCA
* *
72380 TCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGGAAGAATTGAAAAAATGATATTAGAAG
258 TCTGAATCTTGTTTCGATTTAAATAGAAATTAATTCGGGAAAAATTGAAAAAATGATATTAGAAG
*
72445 CGTGAAAAG
323 CGCGAAAAG
** * * *
72454 CCCTTCAATCTTTTTGACGTTGAATTATATATTTTTTACGAGTATGGCGGTTAAAAATTGAGGTA
1 CCCTTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAA
* * * *
72519 AAATCTTTTGGGTCAATTTTTCTAAATTTTTGCTGAAAATCATGTAC-AACCATCACAGATTTTG
66 AAATCTTTTGGGTCAATTTTTCAAAATTTTTGCTG-AAATCGTGTACTAACCATCACGGTTTTTG
* * *
72583 GCTAAAAACGCGTTCCAAGACCCCGGCTCAGTTTTGCGTGATTTTTGGCACCAAGACTCGTTGAA
130 GCTAAAAACGCGTTCCGAGACCCCGACTCAGTTTTGCGTGATTTTTGGCACCAAGACTCATTGAA
72648 ATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCATC
195 ATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCATC
*
72713 TGAAT-TTGTTTCGATTTAAATAGAAATTAATTCTGGAAAAATTGAAAAAATGATATTAGAAGCG
260 TGAATCTTGTTTCGATTTAAATAGAAATTAATTCGGGAAAAATTGAAAAAATGATATTAGAAGCG
72777 CGAAAAG
325 CGAAAAG
**
72784 CTTTTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAA
1 CCCTTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAA
* ** * * *
72849 AAATCTTTCGGGTCTGTTTTTGAAAATTTTTTGCAGAAATCGTGTACTAATCATCA-GGTTTTTG
66 AAATCTTTTGGGTCAATTTTTCAAAA-TTTTTGCTGAAATCGTGTACTAACCATCACGGTTTTTG
* * * * ** *
72913 GCTAAAAACGCGTTCTGGGGCCCCAACTCAGTTTTGAATGATTTTTGGCGCCAAGACTCATTGAA
130 GCTAAAAACGCGTTCCGAGACCCCGACTCAGTTTTGCGTGATTTTTGGCACCAAGACTCATTGAA
* * * *
72978 ATATCTATATTAATCTAACCAAATATCAGCCACAATGGACTTAAGGATTTGTTTTTACGATCATC
195 ATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCATC
*
73043 TGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGGAAAAAATTGAAAAAATGATATTAGAAGC
260 TGAATCTTGTTTCGATTTAAATAGAAATTAATTCGGG-AAAAATTGAAAAAATGATATTAGAAGC
*
73108 GTGAAAAG
324 GCGAAAAG
* * * * * *
73116 CCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTACGAGTATGGCGGTTAAAGATTGCGGTT
1 CCCTTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGG-A
* *
73181 AAAATCTTTCGGGTCAATTTTTGCAAAATTTTTGCCGAAATCGTGTACTAACCATCACGGTTTTT
65 AAAATCTTTTGGGTCAATTTTT-CAAAATTTTTGCTGAAATCGTGTACTAACCATCACGGTTTTT
73246 GGCTAAAAACGCGTTCCGAGACCCCGAGCTCAGTTTTGCGTGATTTTTGGCACCAAGACTCATTG
129 GGCTAAAAACGCGTTCCGAGACCCCGA-CTCAGTTTTGCGTGATTTTTGGCACCAAGACTCATTG
73311 AAATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCA
193 AAATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCA
73376 TCTGAAT-TTGTTTCGATTTAAATAGAAATTAATTCGGGAAAAATTGAAAAAATGATATTAGAAG
258 TCTGAATCTTGTTTCGATTTAAATAGAAATTAATTCGGGAAAAATTGAAAAAATGATATTAGAAG
73440 CGCGAAAAG
323 CGCGAAAAG
** * *
73449 CATTTCAATCTTTTTGGTGTTGAATTTTATATTTTATACGAGTATTGCGGTTAAAAATTAAGGAA
1 CCCTTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAA
* * * * ***
73514 AAATC-TTTCGGTCAATTTTGCAAAA-TTTTACCGAAATCGTGTA-TGTTTCATCACGGTTTTTG
66 AAATCTTTTGGGTCAATTTTTCAAAATTTTTGCTGAAATCGTGTACT-AACCATCACGGTTTTTG
73576 GCTAA
130 GCTAA
73581 TA
Statistics
Matches: 1009, Mismatches: 104, Indels: 29
0.88 0.09 0.03
Matches are distributed among these distances:
328 1 0.00
329 36 0.04
330 385 0.38
331 189 0.19
332 97 0.10
333 135 0.13
334 64 0.06
335 102 0.10
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.36
Consensus pattern (331 bp):
CCCTTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAA
AAATCTTTTGGGTCAATTTTTCAAAATTTTTGCTGAAATCGTGTACTAACCATCACGGTTTTTGG
CTAAAAACGCGTTCCGAGACCCCGACTCAGTTTTGCGTGATTTTTGGCACCAAGACTCATTGAAA
TATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCATCT
GAATCTTGTTTCGATTTAAATAGAAATTAATTCGGGAAAAATTGAAAAAATGATATTAGAAGCGC
GAAAAG
Found at i:73425 original size:665 final size:661
Alignment explanation
Indices: 72127--73580 Score: 2456
Period size: 665 Copynumber: 2.2 Consensus size: 661
72117 TTTGGTACCC
72127 TTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAAAAA
1 TTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAAAAA
* **
72192 TATTTC-GGTCAATTTTTGCAAAATTTTTGTTGAAATCGTGTATAAACCATCACGGTTTTTGGCT
66 TCTTTCGGGTCAATTTTTGCAAAATTTTTGCAGAAATCGTGTATAAACCATCACGGTTTTTGGCT
* * *
72256 AAAAACGCTTCCGGGACTCCGACTCAGTTTTGGATGATTTTTGGCGCCAAGACGCATTGAAATAT
131 AAAAACGCTTCCGGGACCCCAACTCAGTTTTGAATGATTTTTGGCGCCAAGACGCATTGAAATAT
*
72321 CTATATTAATCTAACAAAATATCAGCCACAATGGATTTAAGGATTTGTTTTTACGATCATCTGAA
196 CTATATTAATCTAACAAAATATCAGCCACAATGGACTTAAGGATTTGTTTTTACGATCATCTGAA
*
72386 TCTTGTTTCGATTTAATTAGAAATTAATTCGGGAAGAATTGAAAAAATGATATTAGAAGCGTGAA
261 TCTTGTTTCGATTTAATTAGAAATTAATTCGGGAAAAATTGAAAAAATGATATTAGAAGCGTGAA
72451 AAGCCCTTCAATCTTTTTGACGTTGAATTATATATTTTTTACGAGTATGGCGGTTAAAAATTGAG
326 AAGCCCTTCAATCTTTTTGACGTTGAATTATATATTTTTTACGAGTATGGCGGTTAAAAATTGAG
* * *
72516 GTAAAATCTTTTGGGTCAATTTTTCTAAATTTTTGCTGAAAATCATGTACAACCATCACAGATTT
391 GTAAAATCTTTCGGGTCAATTTTTCAAAATTTTTGCCGAAAATCATGTACAACCATCACAGATTT
*
72581 TGGCTAAAAACGCGTTCCAAGACCCCGGCTCAGTTTTGCGTGATTTTTGGCACCAAGACTCGTTG
456 TGGCTAAAAACGCGTTCCAAGACCCCGGCTCAGTTTTGCGTGATTTTTGGCACCAAGACTCATTG
72646 AAATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCA
521 AAATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCA
*
72711 TCTGAATTTGTTTCGATTTAAATAGAAATTAATTCTGGAAAAATTGAAAAAATGATATTAGAAGC
586 TCTGAATTTGTTTCGATTTAAATAGAAATTAATTCGGGAAAAATTGAAAAAATGATATTAGAAGC
*
72776 GCGAAAAGCTT
651 GCGAAAAGCAT
72787 TTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAAAAA
1 TTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAAAAA
** *
72852 TCTTTCGGGTCTGTTTTTG-AAAATTTTTTGCAGAAATCGTGTACT-AATCATCA-GGTTTTTGG
66 TCTTTCGGGTCAATTTTTGCAAAA-TTTTTGCAGAAATCGTGTA-TAAACCATCACGGTTTTTGG
* * *
72914 CTAAAAACGCGTTCTGGGGCCCCAACTCAGTTTTGAATGATTTTTGGCGCCAAGACTCATTGAAA
129 CTAAAAACGC-TTCCGGGACCCCAACTCAGTTTTGAATGATTTTTGGCGCCAAGACGCATTGAAA
*
72979 TATCTATATTAATCTAACCAAATATCAGCCACAATGGACTTAAGGATTTGTTTTTACGATCATCT
193 TATCTATATTAATCTAACAAAATATCAGCCACAATGGACTTAAGGATTTGTTTTTACGATCATCT
73044 GAATCTTGTTTCGATTTAATTAGAAATTAATTCGGGAAAAAATTGAAAAAATGATATTAGAAGCG
258 GAATCTTGTTTCGATTTAATTAGAAATTAATTCGGG-AAAAATTGAAAAAATGATATTAGAAGCG
* *
73109 TGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTACGAGTATGGCGGTTAAAGAT
322 TGAAAAGCCCTTCAATCTTTTTGACGTTGAATTATATATTTTTTACGAGTATGGCGGTTAAAAAT
* *
73174 TGCGGTTAAAATCTTTCGGGTCAATTTTTGCAAAATTTTTGCCG-AAATCGTGTACTAACCATCA
387 TGAGG-TAAAATCTTTCGGGTCAATTTTT-CAAAATTTTTGCCGAAAATCATGTAC-AACCATCA
* * *
73238 CGGTTTTTGGCTAAAAACGCGTTCCGAGACCCCGAGCTCAGTTTTGCGTGATTTTTGGCACCAAG
449 CAGATTTTGGCTAAAAACGCGTTCCAAGACCCCG-GCTCAGTTTTGCGTGATTTTTGGCACCAAG
73303 ACTCATTGAAATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTT
513 ACTCATTGAAATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTT
73368 TACGATCATCTGAATTTGTTTCGATTTAAATAGAAATTAATTCGGGAAAAATTGAAAAAATGATA
578 TACGATCATCTGAATTTGTTTCGATTTAAATAGAAATTAATTCGGGAAAAATTGAAAAAATGATA
73433 TTAGAAGCGCGAAAAGCAT
643 TTAGAAGCGCGAAAAGCAT
* *
73452 TTCAATCTTTTTGGTGTTGAATTTTATATTTTATACGAGTATTGCGGTTAAAAATTAAGGAAAAA
1 TTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAAAAA
* * ****
73517 TCTTTC-GGTCAA-TTTTGCAAAA-TTTTACCGAAATCGTGTATGTTTCATCACGGTTTTTGGCT
66 TCTTTCGGGTCAATTTTTGCAAAATTTTTGCAGAAATCGTGTATAAACCATCACGGTTTTTGGCT
73579 AA
131 AA
73581 TA
Statistics
Matches: 746, Mismatches: 36, Indels: 21
0.93 0.04 0.03
Matches are distributed among these distances:
660 93 0.12
661 182 0.24
662 117 0.16
663 50 0.07
664 59 0.08
665 245 0.33
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.36
Consensus pattern (661 bp):
TTCAATCTTTTTGGTGTTGAATTATATATTTTATACGAGTATTGCGGTTAAAAATTGAGGAAAAA
TCTTTCGGGTCAATTTTTGCAAAATTTTTGCAGAAATCGTGTATAAACCATCACGGTTTTTGGCT
AAAAACGCTTCCGGGACCCCAACTCAGTTTTGAATGATTTTTGGCGCCAAGACGCATTGAAATAT
CTATATTAATCTAACAAAATATCAGCCACAATGGACTTAAGGATTTGTTTTTACGATCATCTGAA
TCTTGTTTCGATTTAATTAGAAATTAATTCGGGAAAAATTGAAAAAATGATATTAGAAGCGTGAA
AAGCCCTTCAATCTTTTTGACGTTGAATTATATATTTTTTACGAGTATGGCGGTTAAAAATTGAG
GTAAAATCTTTCGGGTCAATTTTTCAAAATTTTTGCCGAAAATCATGTACAACCATCACAGATTT
TGGCTAAAAACGCGTTCCAAGACCCCGGCTCAGTTTTGCGTGATTTTTGGCACCAAGACTCATTG
AAATATCTATATTAATCTAACCAAATAACAACCACAATAGATTTAAGGATTTGTTTTTACGATCA
TCTGAATTTGTTTCGATTTAAATAGAAATTAATTCGGGAAAAATTGAAAAAATGATATTAGAAGC
GCGAAAAGCAT
Done.