Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013498.1 Corchorus olitorius cultivar O-4 contig13531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93314

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1891
331
5.7
332
87
3
2526
31
15
17
35
1.91
1--1891
661
2.9
657
87
3
2569
31
15
17
35
1.91
3478--3533
26
2.2
26
100
0
112
57
10
17
14
1.65
4727--4764
19
2.0
19
94
0
67
47
15
23
13
1.81
10980--11083
54
1.9
54
82
3
129
9
43
5
41
1.61
11121--11166
24
1.9
24
86
0
65
2
39
13
45
1.55
20076--20330
124
2.0
129
85
6
353
46
16
12
24
1.82
22345--22369
12
2.1
12
100
0
50
56
0
8
36
1.29
22420--22450
5
6.2
5
96
0
53
22
0
0
77
0.77
26530--26567
11
3.7
10
86
13
51
0
52
2
44
1.14
26931--26979
24
2.0
24
84
0
62
8
48
14
28
1.72
40902--41114
107
2.0
105
82
6
261
33
17
24
24
1.97
49155--49206
25
2.1
25
92
0
86
25
19
7
48
1.75
52637--52665
9
3.2
9
100
0
58
0
34
34
31
1.58
62510--62554
16
2.9
16
83
6
56
24
2
4
68
1.19
62510--62557
15
3.1
15
80
14
53
25
2
4
68
1.18
64895--64953
27
2.1
29
90
6
95
40
11
11
35
1.79
68510--68534
7
3.6
7
100
0
50
88
0
0
12
0.53
77167--77267
52
2.0
51
86
9
143
26
15
10
46
1.79
84091--84132
18
2.3
18
88
8
59
2
19
0
78
0.86
84088--84133
24
1.9
24
86
8
67
2
19
0
78
0.86
84089--84130
13
3.2
13
83
6
50
2
16
0
80
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84913--84952
21
1.9
21
94
0
71
35
10
20
35
1.86
91283--91322
22
1.9
20
85
10
53
47
0
7
45
1.31

Tables:   1

The End!