Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013500.1 Corchorus olitorius cultivar O-4 contig13533, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10552

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1013--1056
15
2.9
15
96
0
79
20
9
0
70
1.14
1017--1056
5
8.0
5
85
0
53
20
7
0
72
1.08
1131--1188
30
2.0
30
83
6
75
18
8
6
65
1.43
1714--2936
333
3.7
330
86
4
1656
31
13
17
36
1.90
3125--3451
41
7.8
43
79
8
325
40
26
11
21
1.87
3126--3451
84
3.9
85
86
6
461
40
26
11
21
1.87
3561--3610
2
25.0
2
95
0
73
50
6
0
44
1.26
3562--3618
28
2.0
28
96
0
105
50
12
0
36
1.40
3564--3616
26
2.0
26
100
0
106
50
11
0
37
1.38
5458--10548
332
15.3
333
87
3
6930
32
14
17
35
1.91

Tables:   1

The End!