Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013504.1 Corchorus olitorius cultivar O-4 contig13537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66580

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5846--6042
46
4.4
43
82
9
227
20
27
16
35
1.94
6493--6532
20
2.0
21
85
5
55
15
25
50
10
1.74
7021--7249
52
4.7
49
86
7
288
23
30
17
28
1.97
7171--8003
87
9.5
87
75
11
515
21
28
17
32
1.96
6971--7977
131
7.6
128
73
15
562
21
28
17
32
1.96
6966--7856
218
4.0
219
88
4
1164
21
28
17
32
1.96
7299--7899
46
13.9
43
74
14
188
20
27
17
33
1.96
8006--8105
41
2.5
41
91
1
157
19
23
18
40
1.92
8088--8473
48
8.0
48
91
1
569
12
23
21
41
1.87
9502--9561
12
4.8
13
91
8
90
80
0
20
0
0.72
9497--9561
6
10.7
6
90
6
80
80
0
20
0
0.72
9497--9562
7
9.6
7
83
9
57
80
0
19
0
0.72
9502--9606
12
8.8
12
77
17
60
77
0
15
7
0.99
14762--14811
26
2.0
25
88
11
75
12
6
2
80
0.98
21387--21417
3
10.3
3
92
0
53
3
0
64
32
1.09
24976--25216
119
2.0
119
99
0
473
32
20
13
33
1.91
25543--25602
24
2.4
25
88
2
95
50
8
11
30
1.68
26474--26534
2
31.5
2
75
18
58
45
1
3
49
1.28
27357--27473
62
1.9
62
98
0
225
24
27
8
39
1.84
30895--30936
16
2.7
15
82
13
50
33
7
19
40
1.78
33670--33698
12
2.5
12
94
5
51
86
0
13
0
0.58
42144--42172
15
1.9
15
100
0
58
48
3
0
48
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44207--44530
159
2.0
159
98
0
630
24
19
25
30
1.98
53396--53445
10
4.9
10
75
22
50
40
2
2
56
1.22
53394--53469
12
6.7
11
68
25
52
44
1
1
52
1.17
53398--53449
16
3.5
14
73
14
50
40
1
1
55
1.22
53419--53476
21
2.9
21
78
19
61
46
1
0
51
1.11
61528--61783
122
2.0
130
88
8
393
49
1
10
37
1.49
66522--66547
1
26.0
1
100
0
52
100
0
0
0
0.00

Tables:   1

The End!