Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013505.1 Corchorus olitorius cultivar O-4 contig13538, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35792

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4571--4601
10
3.1
10
100
0
62
19
0
9
70
1.14
10484--10510
2
13.5
2
100
0
54
0
48
0
51
1.00
12142--12199
29
2.1
28
87
6
82
25
18
6
48
1.73
15470--15519
24
2.1
23
82
14
57
12
24
14
50
1.76
21467--21510
21
2.1
21
83
8
54
31
2
0
65
1.05
23376--23418
22
1.9
23
95
4
79
37
13
23
25
1.92
29685--29723
20
2.0
20
94
0
69
30
38
12
17
1.88
29746--29799
22
2.5
22
87
0
72
16
27
16
38
1.90
31288--31326
2
18.5
2
89
10
60
48
5
0
46
1.24
35153--35212
30
2.0
30
83
6
77
56
3
18
21
1.55
35381--35527
71
2.1
71
85
3
197
32
8
20
38
1.84

Tables:   1

The End!