genome.fa.s13514.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013514.1 Corchorus olitorius cultivar O-4 contig13547, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58250

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3672--3713	21	2.0	22	90	4	68	23	30	19	26	1.98
16603--16786	45	4.1	45	84	9	241	43	7	13	36	1.71
16603--16786	91	2.0	91	89	7	286	43	7	13	36	1.71
17358--17397	8	5.0	8	84	0	53	60	0	15	25	1.35
18854--19657	54	15.0	53	80	6	714	32	21	18	27	1.96
21855--21988	42	3.2	42	88	2	189	27	25	18	28	1.98
21855--21988	63	2.1	63	91	2	216	27	25	18	28	1.98
21855--21988	21	6.4	20	88	5	169	27	25	18	28	1.98
24055--24083	15	1.9	15	100	0	58	13	6	27	51	1.66
25013--25059	26	1.9	24	87	12	69	40	4	27	27	1.75
25927--26039	21	5.4	21	92	2	183	25	25	18	30	1.98
26261--26316	25	2.1	27	84	12	73	8	19	1	69	1.24
26774--26829	23	2.5	22	79	2	67	3	17	5	73	1.17
30527--30713	41	4.5	41	80	7	207	43	26	10	19	1.83
30527--30713	84	2.2	84	91	0	293	43	26	10	19	1.83
30694--30735	22	1.9	22	95	0	75	45	30	4	19	1.71
36945--37042	35	2.8	33	76	11	88	19	32	18	29	1.96
37318--37659	72	4.8	72	90	1	519	21	26	21	31	1.98
37310--37659	144	2.4	144	90	2	587	20	26	20	32	1.97
38866--39110	43	5.8	43	85	3	345	42	25	11	20	1.86
38866--39110	84	2.9	84	96	0	445	42	25	11	20	1.86
42159--42217	19	3.3	18	77	13	59	67	0	10	22	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43450--43568	55	2.2	55	83	8	145	31	22	17	27	1.97
45592--46384	54	14.8	54	82	4	829	31	21	18	28	1.97
47310--47344	2	17.5	2	93	0	61	48	0	0	51	1.00
50323--50349	1	27.0	1	100	0	54	100	0	0	0	0.00
51321--51358	20	2.0	18	90	10	58	68	10	21	0	1.19
51747--51773	2	13.5	2	100	0	54	51	0	0	48	1.00
53639--53790	74	2.1	74	100	0	304	22	2	20	54	1.57
54754--54843	43	2.2	39	79	14	94	44	12	7	35	1.71
56658--56689	2	16.5	2	93	6	57	50	0	0	50	1.00
56891--56971	39	2.0	40	92	2	137	50	8	3	37	1.51
56962--57011	25	2.0	24	96	3	91	28	6	8	58	1.51
57842--57911	36	1.9	36	88	0	104	60	10	10	20	1.57

Tables:   1

The End!