Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013518.1 Corchorus olitorius cultivar O-4 contig13551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56290

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12348--12471
49
2.5
48
82
3
149
29
16
4
50
1.64
14065--14362
33
9.0
33
76
3
188
17
31
21
29
1.96
20138--20167
6
5.0
6
100
0
60
16
0
0
83
0.65
21223--21250
12
2.3
12
100
0
56
0
14
0
85
0.59
22045--22085
2
20.0
2
90
5
64
46
0
4
48
1.23
22035--22080
21
2.2
21
96
0
83
41
0
8
50
1.33
24214--24252
14
2.9
13
80
3
51
53
2
2
41
1.28
24238--24475
116
2.0
114
87
8
341
50
2
10
37
1.49
27251--27330
32
2.5
32
95
2
144
46
0
15
38
1.46
30306--30339
16
2.2
16
89
5
52
47
2
8
41
1.50
31760--32042
36
7.9
36
90
0
435
44
10
17
27
1.81
33010--33135
35
3.6
35
86
6
184
38
8
23
30
1.85
34934--34979
20
2.3
20
85
7
67
26
32
23
17
1.97
45527--45566
21
1.9
21
84
0
53
35
17
20
27
1.95
47689--47934
35
7.0
35
88
3
343
41
19
12
27
1.86
47746--47804
19
3.2
19
65
18
52
44
18
10
27
1.82
47689--47934
69
3.5
69
87
3
323
41
19
12
27
1.86
47901--48074
56
3.1
55
89
4
242
33
21
17
27
1.96

Tables:   1

The End!