Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013520.1 Corchorus olitorius cultivar O-4 contig13553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4942
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:2591 original size:16 final size:17

Alignment explanation


    Indices: 2570--2601  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

       2560 GAAATTGCGT

                             
       2570 TTTATTTTTCT-TTTTC
          1 TTTATTTTTCTATTTTC

                            
       2586 TTTATTTTTCTATTTT
          1 TTTATTTTTCTATTTT

       2602 AATTTACACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81


Consensus pattern (17 bp):   
TTTATTTTTCTATTTTC

Found at i:3726 original size:22 final size:22

Alignment explanation


    Indices: 3698--3744  Score: 85
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       3688 AAGAGTGCCC

                                  
       3698 AGGTAAATACTCTGAAATTTAG
          1 AGGTAAATACTCTGAAATTTAG

                                * 
       3720 AGGTAAATACTCTGAAATTTTG
          1 AGGTAAATACTCTGAAATTTAG

               
       3742 AGG
          1 AGG

       3745 CTACTAGCAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32


Consensus pattern (22 bp):   
AGGTAAATACTCTGAAATTTAG
Done.