Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013526.1 Corchorus olitorius cultivar O-4 contig13559, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17059

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4551--4577
13
2.1
13
100
0
54
22
22
22
33
1.97
5789--5882
45
2.2
43
90
7
147
38
22
5
34
1.77
6427--6467
20
2.0
20
95
0
73
36
0
4
58
1.20
11512--11587
16
4.7
17
77
11
79
6
14
39
39
1.72
13392--13669
50
5.6
48
85
6
351
22
25
18
33
1.97
14312--14386
28
2.7
27
83
8
80
30
18
14
36
1.91
16137--16276
22
6.2
22
88
5
190
30
21
2
46
1.63
16137--16276
68
2.1
68
93
0
235
30
21
2
46
1.63
16140--16411
22
12.0
23
77
13
114
29
22
3
45
1.68
16137--16468
8
43.5
8
72
13
229
30
21
3
45
1.69

Tables:   1

The End!