Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013533.1 Corchorus olitorius cultivar O-4 contig13566, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56279

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--2799
154
18.2
154
92
1
4478
22
18
19
40
1.91
3546--3592
21
2.2
21
96
0
85
34
4
29
31
1.77
15703--15742
21
1.9
21
84
0
53
35
17
17
30
1.93
28814--28852
9
4.3
9
87
6
53
74
7
0
17
1.05
29165--29205
21
2.0
21
85
9
57
34
9
26
29
1.88
29659--29687
15
1.9
15
100
0
58
55
24
6
13
1.63
29868--29959
21
4.4
21
87
5
132
28
20
25
26
1.99
30829--30875
26
1.9
24
87
12
69
27
27
4
40
1.75
32235--32275
21
2.0
21
85
9
57
36
4
24
34
1.77
32353--32490
33
4.2
33
75
12
97
27
7
21
42
1.81
41902--41940
6
6.5
6
85
11
53
28
0
2
69
1.02
42161--42190
14
2.2
13
94
5
51
30
40
30
0
1.57
42749--42787
20
2.0
20
89
0
60
46
5
30
17
1.70
42786--42836
22
2.4
21
76
3
57
45
17
23
13
1.84
48584--48623
21
1.9
21
85
10
55
32
10
27
30
1.89
52186--52226
21
1.9
22
85
5
57
21
39
9
29
1.86

Tables:   1

The End!