Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013539.1 Corchorus olitorius cultivar O-4 contig13572, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10344
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:8638 original size:12 final size:12

Alignment explanation


    Indices: 8621--8645  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       8611 TTCGATAAAA

                        
       8621 AAAATACCTGCC
          1 AAAATACCTGCC

                        
       8633 AAAATACCTGCC
          1 AAAATACCTGCC

             
       8645 A
          1 A

       8646 CTCACGCACT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.44, C:0.32, G:0.08, T:0.16


Consensus pattern (12 bp):   
AAAATACCTGCC
Done.