Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013544.1 Corchorus olitorius cultivar O-4 contig13577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24090

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
361--403
17
2.6
16
78
10
50
44
6
41
6
1.58
5947--5988
15
2.7
15
92
3
66
64
14
9
11
1.50
11497--11533
18
2.0
19
94
5
67
64
10
13
10
1.49
17560--17635
15
4.9
15
76
6
80
5
17
38
39
1.72
17560--17635
31
2.5
31
95
0
134
5
17
38
39
1.72
17560--17651
16
5.9
15
78
12
87
4
16
38
41
1.68
17626--17707
32
2.6
32
82
3
94
9
15
35
39
1.81
17702--17761
6
10.3
6
74
13
54
1
21
46
30
1.61
17702--17758
23
2.5
23
91
0
87
1
22
47
28
1.61
17726--17760
17
2.1
17
94
0
61
0
25
48
25
1.51
18684--18724
21
1.9
22
90
5
66
31
12
4
51
1.60
18706--18835
45
2.9
45
82
7
133
36
16
12
33
1.87
18706--19110
22
18.6
22
68
14
119
37
15
9
37
1.80
18909--19072
82
2.0
83
80
3
188
35
17
7
40
1.77
19236--19430
22
8.8
22
69
15
98
32
15
9
42
1.80
19327--19381
21
2.5
21
85
5
65
36
10
7
45
1.67
19238--19381
44
3.3
45
74
12
140
34
13
8
43
1.75
20583--20625
16
2.7
16
77
0
50
9
11
41
37
1.74
21458--21490
16
2.1
16
100
0
66
30
6
24
39
1.79

Tables:   1

The End!