Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013546.1 Corchorus olitorius cultivar O-4 contig13579, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24182

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6808--6846
19
2.1
19
95
0
69
20
28
15
35
1.93
8992--9025
15
2.2
16
89
5
52
41
2
5
50
1.42
9219--9310
46
2.0
46
91
0
148
22
18
38
20
1.94
9264--9398
38
3.5
38
84
2
198
23
17
33
25
1.96
10487--10542
28
2.0
28
100
0
112
32
3
25
39
1.73
12484--12541
16
3.6
16
72
9
64
6
17
39
36
1.76
12531--12565
17
2.1
17
88
0
52
2
22
45
28
1.67
14733--14770
2
19.5
2
94
5
69
52
0
0
47
1.00
15607--15678
31
2.3
31
77
13
85
61
9
4
25
1.45
16186--16305
33
3.9
32
78
20
150
6
21
49
22
1.73
16187--16311
56
2.2
56
95
0
232
6
22
48
22
1.73
16220--16273
23
2.3
23
96
0
99
5
22
50
22
1.70
16500--16777
150
1.9
150
96
0
520
26
24
16
32
1.96
19452--19648
22
9.1
21
69
12
103
38
18
9
34
1.83
19781--19929
22
6.8
22
70
6
88
36
11
10
42
1.75
19913--19995
22
3.8
22
76
6
96
38
10
12
38
1.78
19891--20014
44
2.8
44
78
0
131
33
12
13
40
1.82
19851--20012
66
2.4
65
75
11
150
33
12
11
41
1.80
21686--21729
5
9.2
5
85
9
65
59
0
18
22
1.38
21682--21729
18
2.9
17
90
9
73
58
0
18
22
1.39

Tables:   1

The End!