Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013547.1 Corchorus olitorius cultivar O-4 contig13580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46603

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29--70
15
2.7
15
92
3
66
64
14
9
11
1.50
1424--1483
29
2.0
31
87
6
88
40
18
6
35
1.77
1453--1483
11
2.7
12
90
10
55
38
19
6
35
1.77
1430--1482
11
5.2
11
80
17
53
41
18
5
33
1.74
11813--11858
19
2.4
19
88
0
74
47
8
17
26
1.76
17156--17484
177
1.9
177
90
0
532
33
9
11
45
1.73
17482--17515
16
2.1
16
100
0
68
35
5
0
58
1.22
17498--17816
167
1.9
166
91
2
525
35
9
9
45
1.68
17896--18449
142
3.9
141
84
3
706
34
11
9
44
1.73
24485--24565
42
1.9
42
92
5
137
48
13
7
30
1.70
25880--25914
15
2.2
16
90
5
54
42
8
8
40
1.66
28308--28383
26
2.7
28
78
12
84
34
10
5
50
1.59
28317--28396
26
3.0
26
80
8
88
36
11
5
47
1.61
38113--38167
24
2.3
24
93
0
92
25
50
12
10
1.73
40734--40771
13
3.0
13
85
14
53
2
18
0
78
0.86
41142--41239
27
3.6
27
91
0
151
42
25
14
17
1.87
41671--42224
281
2.0
282
95
0
993
25
11
18
44
1.84
44552--44581
12
2.4
13
88
11
53
13
6
13
66
1.43

Tables:   1

The End!