Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013548.1 Corchorus olitorius cultivar O-4 contig13581, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40559

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3458
154
22.1
154
82
8
3510
41
17
19
21
1.90
1307--1416
56
1.9
57
90
1
177
42
20
18
18
1.89
1173--1576
209
1.9
209
93
2
659
42
18
18
21
1.89
1356--3458
461
4.6
461
90
1
3266
41
17
19
21
1.90
4268--4315
21
2.3
21
89
7
71
27
27
16
29
1.97
5149--5191
21
2.0
21
82
8
52
27
27
18
25
1.98
6927--7024
33
2.9
34
80
10
105
43
21
9
25
1.82
6962--7066
33
3.2
33
78
8
97
45
20
8
25
1.79
10543--10607
33
2.0
33
90
3
105
7
29
40
23
1.82
11023--11090
27
2.5
27
92
4
102
19
14
47
19
1.83
11023--11079
27
2.1
27
100
0
114
19
14
45
21
1.85
14293--14399
33
3.2
33
78
6
101
14
41
33
10
1.80
22604--22658
21
2.6
21
94
0
92
1
36
20
41
1.63
28571--28626
12
4.9
12
74
12
55
71
1
3
23
1.11
35071--35163
35
2.5
36
80
11
100
39
15
17
27
1.89
35099--35183
39
2.2
39
83
8
102
47
12
14
25
1.80
35959--35995
18
2.1
17
95
5
65
86
0
13
0
0.57
35948--35998
21
2.5
21
87
3
68
82
0
15
1
0.76
38679--38723
2
22.5
2
100
0
90
51
48
0
0
1.00
38723--38761
2
20.0
2
94
5
71
48
0
0
51
1.00

Tables:   1

The End!