Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013551.1 Corchorus olitorius cultivar O-4 contig13584, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106820

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
927--975
14
3.6
14
76
13
57
18
10
24
46
1.79
925--979
27
2.1
25
90
10
83
18
9
23
49
1.76
9329--9364
13
2.8
14
88
12
51
47
11
5
36
1.63
12442--12483
21
2.0
21
86
9
59
52
2
2
42
1.27
40096--40135
17
2.4
16
84
12
53
55
0
0
45
0.99
41438--41515
7
11.1
7
76
15
63
61
2
1
34
1.18
41437--41513
3
25.3
3
75
19
63
62
2
1
33
1.17
41437--41516
39
2.1
39
83
9
101
62
2
1
33
1.16
41438--41513
11
6.5
11
80
11
82
61
2
1
34
1.18
42659--42702
11
4.0
11
88
8
63
0
81
0
18
0.68
42660--42702
17
2.6
16
89
7
68
0
83
0
16
0.64
42669--42702
6
5.8
6
93
6
61
0
85
0
14
0.60
43562--43587
13
2.0
13
100
0
52
15
7
15
61
1.55
43909--43990
40
2.0
40
100
0
164
21
10
21
45
1.83
46364--46449
43
2.0
43
97
0
163
20
12
25
40
1.88
49195--49236
20
2.0
21
90
4
68
61
14
4
19
1.49
54041--54087
21
2.2
21
88
0
67
27
17
21
34
1.95
58999--59033
6
5.8
6
93
0
61
62
0
37
0
0.95
63609--63666
21
2.9
19
79
5
62
31
20
10
37
1.86
73711--73830
64
1.9
64
96
0
222
35
23
15
25
1.94
84990--85155
82
2.0
82
96
0
305
37
7
13
40
1.73
86260--86285
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87744--87774
3
10.3
3
92
0
53
0
35
0
64
0.94

Tables:   1

The End!