Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013552.1 Corchorus olitorius cultivar O-4 contig13585, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47289

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2732--2801
36
1.9
36
91
0
113
21
10
8
60
1.55
3317--3729
205
2.0
203
92
3
697
44
8
11
36
1.71
3798--3844
25
1.9
24
91
4
76
55
6
6
31
1.51
3835--3915
39
2.0
40
92
2
137
37
3
8
50
1.51
5832--5930
52
1.9
52
97
0
189
37
12
16
34
1.85
14960--14993
6
5.7
6
96
0
59
79
0
17
2
0.86
25602--25776
88
2.0
88
89
0
269
33
21
13
32
1.91
30746--30995
121
2.0
127
88
7
377
49
2
10
38
1.49
35273--35311
19
2.2
19
86
9
55
56
0
2
41
1.13
35353--35387
14
2.5
14
95
0
61
42
28
25
2
1.69
40587--40824
68
3.6
69
89
7
311
24
16
23
35
1.95
40563--41839
87
14.5
101
80
15
395
29
14
20
34
1.93
40636--41839
31
41.4
31
84
11
1216
30
14
20
34
1.93
41844--44020
644
3.4
640
83
7
2463
32
13
17
36
1.89
41844--44056
323
6.9
322
83
7
2412
32
13
17
36
1.89
41844--44056
630
3.5
628
83
7
2309
32
13
17
36
1.89
45110--47283
321
6.8
319
74
11
1478
32
13
16
36
1.89

Tables:   1

The End!