Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013553.1 Corchorus olitorius cultivar O-4 contig13586, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75206

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1494--1537
2
22.0
2
95
0
79
52
0
0
47
1.00
3649--3723
39
1.9
39
86
5
107
45
21
26
6
1.76
3692--4153
62
7.5
62
95
1
822
35
22
38
3
1.72
4126--4248
34
3.6
34
95
1
221
47
17
31
3
1.63
4360--4391
2
16.0
2
100
0
64
50
0
50
0
1.00
5096--5204
45
2.4
45
86
1
148
37
16
23
22
1.93
5120--5220
45
2.2
45
92
0
166
31
21
21
24
1.98
10281--10307
1
27.0
1
100
0
54
100
0
0
0
0.00
19128--19283
81
1.9
82
86
5
226
39
4
25
30
1.76
26906--26968
29
2.1
29
91
2
99
26
23
3
46
1.68
37198--37238
15
2.6
15
88
7
55
53
9
0
36
1.34
38147--38310
59
2.8
60
86
1
249
34
15
19
29
1.93
38191--38277
29
3.0
29
68
9
86
32
17
20
29
1.95
38433--38535
29
3.5
28
71
20
93
33
18
19
29
1.96
38388--38562
31
5.8
31
71
10
146
33
18
19
28
1.95
38402--38562
60
2.7
60
91
0
250
34
18
19
27
1.95
38143--38631
256
1.9
255
92
0
816
32
19
18
30
1.95
38607--38678
31
2.3
31
90
0
108
26
19
9
44
1.81
42867--42910
14
3.1
14
80
0
61
54
13
0
31
1.39
43046--43269
110
2.0
110
97
0
421
27
20
14
37
1.92
43579--43611
7
5.0
7
96
3
52
75
0
24
0
0.80
43580--43620
6
6.5
6
91
2
55
78
2
19
0
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49647--49693
21
2.2
21
88
0
67
17
19
53
10
1.72
49753--49811
24
2.5
24
94
0
100
10
32
44
13
1.77
49753--49825
24
3.1
23
88
2
83
9
30
43
16
1.80
63482--63508
3
9.0
3
100
0
54
66
0
0
33
0.92
68969--69032
32
2.0
32
100
0
128
25
15
25
34
1.95
69559--69593
18
2.0
18
88
5
54
28
2
8
60
1.41
71168--71210
2
21.5
2
86
9
61
46
0
2
51
1.13
71180--71221
12
3.7
11
81
15
50
42
0
2
54
1.13

Tables:   1

The End!