Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013554.1 Corchorus olitorius cultivar O-4 contig13587, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112299

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--49
15
3.1
15
78
3
51
64
0
4
31
1.12
26884--26917
2
17.0
2
100
0
68
50
0
0
50
1.00
30210--30309
50
2.0
50
98
0
191
49
16
23
12
1.78
45051--45090
2
20.0
2
100
0
80
50
0
0
50
1.00
48180--48206
1
27.0
1
100
0
54
0
0
0
100
0.00
59015--59051
19
1.9
19
100
0
74
37
10
13
37
1.80
63071--63096
6
4.3
6
100
0
52
15
34
0
50
1.45
68306--68332
5
5.4
5
100
0
54
55
44
0
0
0.99
73629--73663
10
3.4
10
92
7
61
8
0
8
82
0.83
73629--73664
11
3.4
11
96
3
65
8
0
8
83
0.82
73620--73663
21
2.1
21
91
0
70
11
0
11
77
1.00
101052--101086
2
18.5
2
88
11
56
0
54
0
45
0.99
107692--107731
21
1.9
21
84
0
53
27
22
15
35
1.94
109483--109540
19
2.9
19
76
5
62
37
12
18
31
1.88

Tables:   1

The End!