Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013555.1 Corchorus olitorius cultivar O-4 contig13588, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9500
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Found at i:2317 original size:197 final size:197
Alignment explanation
Indices: 1970--2358 Score: 602
Period size: 197 Copynumber: 2.0 Consensus size: 197
1960 TTTGATAAAC
* *
1970 ATAGATATTTCAAAGAGACTTTCTGCTAAAAATCTTGCAAAACTGAGCTGGAACCCCGAAACGCA
1 ATAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAAACTGAGCTGGAACCCCGAAACGCA
* *
2035 TTTTAGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCCTAGAATTTTTT
66 TTTTAGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAGAATTTTTT
** * *
2100 TCATAATTTTTTTTGCCACAATACTCACAAAAAGTATATAATTCAACGCCAATAAGATTGTATGA
131 TCATAATGATTTTCGCCACAATACTCACAAAAAATATATAATTCAACGCCAATAAGATTGTATGA
2165 AT
196 AT
* * *
2167 ATAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCG
1 ATAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAAACTGAGCTGGAACCCCGAAACGCA
* *
2232 TTTTTGATCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGA-AATTTTT
66 TTTTAG-CCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAGAA-TTTT
* * *
2296 TTTCTTGA-GATTTTCGCCACAATACTCAGAAAAAATATATAATTCAACGCCAATAAGATTGTA
129 TTTCATAATGATTTTCGCCACAATACTCACAAAAAATATATAATTCAACGCCAATAAGATTGTA
2359 GGGTTTTTCA
Statistics
Matches: 174, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
197 117 0.67
198 57 0.33
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (197 bp):
ATAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAAACTGAGCTGGAACCCCGAAACGCA
TTTTAGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAGAATTTTTT
TCATAATGATTTTCGCCACAATACTCACAAAAAATATATAATTCAACGCCAATAAGATTGTATGA
AT
Found at i:2689 original size:192 final size:193
Alignment explanation
Indices: 2361--2751 Score: 590
Period size: 192 Copynumber: 2.0 Consensus size: 193
2351 AGATTGTAGG
* * *
2361 GTTTTTCACGTTTCTCATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAATCGAAACA
* * *
2426 AGATACAGATGCTTGCAAAAACAAATCCATAAATCGAATGTAACTAGGAATTGGTTCGATAAATA
66 AGATACAGATGCTCGCAAAAACAAATCCATAAATCGAATGCAACTAGGAATTGGTTCCATAAATA
* * *
2491 TAGATATTTCAAAGAGACTTTCTGCTAAAAATCTTGCAAAAT-TGAGCTGGAACCCCGAAACGC
131 TAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGC-AAATCTGAGCTGGAACCCCAAAACGA
2554 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAAT-GAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAATCGAAACA
* * * * *
2618 AGATTCAGATGCTCGTAAAAATAAATCCATAAA-CAGAATGCGACTAGGAATTGGTTCCATAACT
66 AGATACAGATGCTCGCAAAAACAAATCCATAAATC-GAATGCAACTAGGAATTGGTTCCATAAAT
* * *
2682 ATAGATATTTCGAAGAGACTTTTTGCTAAAAATCATGCAAATCTGAGCTGGGACCCCAAAACGA
130 ATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCTGAGCTGGAACCCCAAAACGA
2746 GTTTTT
1 GTTTTT
2752 AGCCTAAAAA
Statistics
Matches: 179, Mismatches: 17, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
191 5 0.03
192 119 0.66
193 55 0.31
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (193 bp):
GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAATCGAAACA
AGATACAGATGCTCGCAAAAACAAATCCATAAATCGAATGCAACTAGGAATTGGTTCCATAAATA
TAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCTGAGCTGGAACCCCAAAACGA
Found at i:3315 original size:322 final size:323
Alignment explanation
Indices: 2554--5709 Score: 4323
Period size: 322 Copynumber: 9.8 Consensus size: 323
2544 CCCGAAACGC
*
2554 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAAT-GAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
* * * *
2618 AGATTCAGATGCTCGTAAAAATAAATCCATAAA-CAGAATGCGACTAGGAATTGGTTCCAT-AAC
66 AGATTCAGATGCTTGTAAAAACAAATCCATAAATC-GAATGTGACTAGGAATTGGTTCGATGAA-
* ** * *
2681 TATAGATATTTCGAAGAGACTTTTTGCTAAAAATCATGCAAATCTGAGCTGGGACCCCAAAACGA
129 TATAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGC
* * *
2746 GTTTTTAGCCTAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAAATTTT
194 GTTTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCC-AAAATTTT
* * * * *
2811 TTTCTTG-AGTTTTTTGCCACAATACTCAGAAAAGGTATATAATTCAACTCCAATAAGATTATAG
258 TTTCTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAAATTGTAG
2875 G
323 G
*
2876 GTTTTTCACGCTTCTAATATATCG-TTTTCCATTTTTCCCGAAATAATTTCTAATTAAATCGAAA
1 GTTTTTCACGCTTCT-A-ATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAA
*
2940 CAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAA
64 CAAGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAA
* *
3005 TATAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTAAGCTGGGACCCCGAAACAC
129 TATAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGC
* * *** *
3070 GTTTATGGCCCAAAAA-CGTGATGGTTAGTGCACGATTTCTAATAAAAATAGACCCAAAAATTTT
194 GTTTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCCAAAATTTTT
* * *
3134 TTCTTGAACTTTTTGGCCACAATACTCAGAAAAAGCAAATAATTCAACGCCAATAAAATTGTAGG
259 TTCTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAAATTGTAGG
*
3199 GTTTTTCATGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
* * * * *
3264 AGATACAGATGCTTGCAAAAACAAATCCATAAATCGAATGTAAGTAGGAATTGGTTCGATAAATA
66 AGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
* * * * *
3329 TAGATATTTCAAAGAGACTTTCTGCTAAAAATCTTGCAAAACTGAGCTGGAACACCGAAACGCGT
131 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCGT
* * *
3394 TTTTAGCCCAATAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCCGAGAATTTTTT
196 TTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCC-AAAATTTTTT
* * *
3459 TCTT-AAATTTTTTGCCACAATACTCAGAATAAGTATATAATTCAACGCCAATAAGATTGTAGG
260 TCTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAAATTGTAGG
* * *
3522 GCTTTTCACGCTTCTAATATCTTTTTTTTTCA-TTTTCCCGAAATAATTTTTAATTAAATCGAAA
1 GTTTTTCACGCTTCTAATATC--GTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAA
* *
3586 CAAGATTCAGATGCTTGTAAAAGCAAATCCATAGATCGAATGTGACTAGGAATTGGTTCGATGAA
64 CAAGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAA
* * *
3651 TATAGATATTTCAAATAGACTTTCTGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACAC
129 TATAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGC
* * * * **
3716 GTTTATGTCCCGAAAAA-CTTGATGGTTAGTGA-ACGATTTCCGATAAAAATAGACCTGTAAATT
194 GTTTTTGGCCC-AAAAACCGTGATGGTTAGT-ACACGATTTCCGCTAAAAATAGACC-CAAAATT
*
3779 TTTTTCTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAAAAAAATTGT
256 TTTTTCTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAAATTGT
*
3844 TGG
321 AGG
*
3847 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAAT-GAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
* * * * * *
3911 AGATTCAGATGCTCGCAAAAACAAATCCATAAATAGAATGCGACTAGGAATTGGTTCCATGACTA
66 AGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
* * ** * * * *
3976 TAGATATTCCGAAGAGACTTTTTGCTAAAAATCATTCAAATATGAGCTGAGACCCCTAAACGCGT
131 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCGT
* * *
4041 TTTTGGCTCAAAAACCGTGA----T-GTACACGATTTCCGCTAAAAACAGACCCGAAATTTTTTT
196 TTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCC-AAAATTTTTT
* * * * *
4101 TCTTG-AGTTTTTTGCCATAATACTCGGAAAAAATATATAATTCAACGCCAA-AAAGATTATAGG
260 TCTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAA-ATTGTAGG
** * *
4164 GTTTTTCACGCTTCTAATATCGTTAATTCATTTTTCCCGAAATAATTTCTAATTACATTGAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
* * * * *
4229 AGATTCATATGCTTGTAAAAGCAAATCCATAAATTGAATGTGACAAGGAATTGGTTTGATGAATA
66 AGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
4294 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCGT
131 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCGT
** * *
4359 TTTTGATCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAATTTTTTT
196 TTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCC-AAAATTTTTT
*
4424 TCTTGAGA--TTTTCGCCACAATACTCAGAAAAA-TATATAATTCAACGCCAATAAAATTGTAGG
260 TCTTGA-ACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAAATTGTAGG
* * *
4486 GTTTTTCACGCTTCTCATATCGTTTTTTCAATTTTCTCGAAATAATTTCTAATTAAATCGAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
* ** * * * *
4551 AGATACAGATGCTTACAAAAACAAATCCATAAATCGAATGTAAATAGGAATTGGTTCGATAAACA
66 AGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
* * * * * * * *
4616 TAGATATTTCAAAGAGACTCTCTA-ATAAAAATCTTGCAAAACTGAGTTGGAACACCGAAACGCA
131 TAGATATTTCAAAGAGACTTTC-AGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCG
* * * * * * *
4680 TTTTTAGCACAAAAACCGTGATGGTTAGTTCACGATTTCTGCTAAAAATAGATCCGAGAATTTTC
195 TTTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGA-CCCAAAATTTTT
* * * * * *
4745 TTCTT-AAATTTTTCTGCCACGATACTGAGAAAAGGTATATAATTCAACACCAATAAGATTGTAG
259 TTCTTGAACTTTTT-TGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAAATTGTAG
4809 G
323 G
* *
4810 GTTTTTCACGCTTTTAATATCTTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
* * * *
4875 AGATTCAGATGCTTGTAAAAGCAAATTCATAAATCGAATATGACTTGGAATTGGTTCGATGAATA
66 AGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
*
4940 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACACGT
131 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCGT
* * * * **
5005 TTATGGCCCAAAAAACGTGATGGTTAGTGCACGATTTCCGATAAAAATAGACCCGTAATTTTTTT
196 TTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCCAAAATTTTTTT
* *
5070 CTTCAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAAAAAAATTGTAGG
261 CTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAAATTGTAGG
* *
5133 GTTTTTCACGCTTCTAATATCGTTTATTCATTTTTCCCGAAATAATTTCTAACTAAAT-GAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
* * * * * * *
5197 TGATTCAGATGGTCGTAAAAACAAATCCATAAATAGAATGCGACTAGGAATTGGTTCCATGATTA
66 AGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
* * *
5262 TAGATATTTCGAAGAGACTTTCTGCTAAAAATCATGCAAATCTGAGCTGGAACCCCGAAACGCGT
131 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCGT
* * *
5327 TTTTGGCCCAAAAACCGTAATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAATTTTTTT
196 TTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCCAAAATTTTTTT
* *
5392 CCTTG-AGTTTTTTGCCACAATACTCAGAAAAA-TATATAATTCAACGCCAA-AAAGATTATAGG
261 -CTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAA-ATTGTAGG
* *
5454 GTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTCCCGAAATAATTTCTAATTAAATCAAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
* * * * *
5519 AGATTCAGATGCTTGTAAAAGCGAATCCATAAATTGAATGTGACTAGGAATTGGTTTGACGAATA
66 AGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
* * * *
5584 TAGATATTTCAAAGATACTTTCACCTAAAAATCATGAAAATCTTAGCTGGGACCCCGAAACGCGT
131 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCGT
** * * *
5649 TTTTGATCTAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAATTT
196 TTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCCAAAATTT
5710 CTAACTAAAT
Statistics
Matches: 2495, Mismatches: 299, Indels: 80
0.87 0.10 0.03
Matches are distributed among these distances:
316 3 0.00
317 103 0.04
318 171 0.07
319 1 0.00
320 4 0.00
321 87 0.03
322 834 0.33
323 579 0.23
324 622 0.25
325 91 0.04
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (323 bp):
GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
AGATTCAGATGCTTGTAAAAACAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCGT
TTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCCAAAATTTTTTT
CTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAATAAAATTGTAGG
Found at i:4938 original size:646 final size:640
Alignment explanation
Indices: 2554--5709 Score: 4612
Period size: 646 Copynumber: 4.9 Consensus size: 640
2544 CCCGAAACGC
2554 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAATGAAACAA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAATGAAACAA
* *
2619 GATTCAGATGCTCGTAAAAATAAATCCATAAA-CAGAATGCGACTAGGAATTGGTTCCATAACTA
66 GATTCAGATGCTCGCAAAAACAAATCCATAAATC-GAATGCGACTAGGAATTGGTTCCATAAC-A
* * * * * *
2683 TAGATATTTCGAAGAGACTTTTTGCTAAAAATCATGCAAATCTGAGCTGGGACCCCAAAACGAGT
129 TAGATATTTCGAAGAGACTTTCTGCTAAAAATCTTGCAAAACTGAGCTGGAACCCCGAAACGCGT
*
2748 TTTTAGCCTAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAAATTTTTT
194 TTTTAGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCG-AAATTTTTT
*
2813 TCTTGAGTTTTTTGCCACAATACTCAGAAAAGGTATATAATTCAACTCCAATAAGATTATAGGGT
258 TCTTGAGTTTTTTGCCACAATACTCAGAAAA-GTATATAATTCAACGCCAATAAGATTATAGGGT
* * *
2878 TTTTCACGCTTCTAATATATCGTTTTCCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACAA
322 TTTTCACGCTTCTAATATCT-TTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACAA
2943 GATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATAT
386 GATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATAT
*
3008 AGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTAAGCTGGGACCCCGAAACACGTT
451 AGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACACGTT
** * ** * *
3073 TATGGCCCAAAAACGTGATGGTTAGTGCACGATTTCTAATAAAAATAGACCCAAAAATTTTTTCT
516 TATGATCCAAAAACGTGATGGTTAGTACACGATTTCCGATAAAAATAGACCCGAAATTTTTTTCT
* * *
3138 TGAACTTTTTGGCCACAATACTCAGAAAAAGCAAATAATTCAACGCCAATAAAATTGTAGG
581 TGAACTTTTT-GCCACAATACTCAGAAAAAGTATATAATTCAACGCCAAAAAAATTGTAGG
* *
3199 GTTTTTCATGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAAT-GAAACA
* * ** * * *
3264 AGATACAGATGCTTGCAAAAACAAATCCATAAATCGAATGTAAGTAGGAATTGGTTCGATAAATA
65 AGATTCAGATGCTCGCAAAAACAAATCCATAAATCGAATGCGACTAGGAATTGGTTCCAT-AACA
* *
3329 TAGATATTTCAAAGAGACTTTCTGCTAAAAATCTTGCAAAACTGAGCTGGAACACCGAAACGCGT
129 TAGATATTTCGAAGAGACTTTCTGCTAAAAATCTTGCAAAACTGAGCTGGAACCCCGAAACGCGT
* *
3394 TTTTAGCCCAATAACCGTGATGGTTAGTACACGATTTCCGCTAAAAATAGACCCGAGAATTTTTT
194 TTTTAGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGA-AATTTTTT
* * * *
3459 TCTTAAATTTTTTGCCACAATACTCAGAATAAGTATATAATTCAACGCCAATAAGATTGTAGGGC
258 TCTTGAGTTTTTTGCCACAATACTCAGAA-AAGTATATAATTCAACGCCAATAAGATTATAGGGT
*
3524 TTTTCACGCTTCTAATATCTTTTTTTTTCA-TTTTCCCGAAATAATTTTTAATTAAATCGAAACA
322 TTTTCACGCTTCTAATATC--TTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
*
3588 AGATTCAGATGCTTGTAAAAGCAAATCCATAGATCGAATGTGACTAGGAATTGGTTCGATGAATA
385 AGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
* *
3653 TAGATATTTCAAATAGACTTTCTGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACACGT
450 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACACGT
* *
3718 TTATG-TCCCGAAAAACTTGATGGTTAGTGA-ACGATTTCCGATAAAAATAGACCTGTAAATTTT
515 TTATGAT-CC-AAAAACGTGATGGTTAGT-ACACGATTTCCGATAAAAATAGACCCG-AAATTTT
*
3781 TTTCTTGAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAAAAAAATTGTTG
576 TTTCTTGAAC-TTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAAAAAAATTGTAG
3846 G
640 G
3847 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAATGAAACAA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAATGAAACAA
* *
3912 GATTCAGATGCTCGCAAAAACAAATCCATAAATAGAATGCGACTAGGAATTGGTTCCATGACTAT
66 GATTCAGATGCTCGCAAAAACAAATCCATAAATCGAATGCGACTAGGAATTGGTTCCATAAC-AT
* * *
3977 AGATATTCCGAAGAGACTTTTTGCTAAAAATCATT-CAAATA-TGAGCT-GAGACCCCTAAACGC
130 AGATATTTCGAAGAGACTTTCTGCTAAAAATC-TTGCAAA-ACTGAGCTGGA-ACCCCGAAACGC
* *
4039 GTTTTTGGCTCAAAAACCGTGA----T-GTACACGATTTCCGCTAAAAACAGACCCGAAATTTTT
192 GTTTTTAGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAA-TTTT
* * * *
4099 TTTCTTGAGTTTTTTGCCATAATACTCGGAAAAAATATATAATTCAACGCCAAAAAGATTATAGG
256 TTTCTTGAGTTTTTTGCCACAATACTCAG-AAAAGTATATAATTCAACGCCAATAAGATTATAGG
* ** * *
4164 GTTTTTCACGCTTCTAATATCGTTAATTCATTTTTCCCGAAATAATTTCTAATTACATTGAAACA
320 GTTTTTCACGCTTCTAATATCTTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACA
* * * *
4229 AGATTCATATGCTTGTAAAAGCAAATCCATAAATTGAATGTGACAAGGAATTGGTTTGATGAATA
385 AGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATA
*
4294 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACGCGT
450 TAGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACACGT
* * *
4359 TTTTGATCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAATTTTTTT
515 TTATGATCCAAAAA-CGTGATGGTTAGTACACGATTTCCGATAAAAATAGACCCGAAA-TTTTTT
* *
4424 TCTTGAGA-TTTTCGCCACAATACTCAGAAAAA-TATATAATTCAACGCCAATAAAATTGTAGG
578 TCTTGA-ACTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAAAAAAATTGTAGG
* * * *
4486 GTTTTTCACGCTTCTCATATCGTTTTTTCAATTTTCTCGAAATAATTTCTAATTAAATCGAAACA
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAAT-GAAACA
* ** ** * *
4551 AGATACAGATGCTTACAAAAACAAATCCATAAATCGAATGTAAATAGGAATTGGTTCGATAAACA
65 AGATTCAGATGCTCGCAAAAACAAATCCATAAATCGAATGCGACTAGGAATTGGTTCCAT-AACA
* * ** * * *
4616 TAGATATTTCAAAGAGACTCTCTAATAAAAATCTTGCAAAACTGAGTTGGAACACCGAAACGCAT
129 TAGATATTTCGAAGAGACTTTCTGCTAAAAATCTTGCAAAACTGAGCTGGAACCCCGAAACGCGT
* * * * * *
4681 TTTTAGCACAAAAACCGTGATGGTTAGTTCACGATTTCTGCTAAAAATAGATCCGAGAATTTTCT
194 TTTTAGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGA-AATTTTTT
* * * * * *
4746 TCTTAAATTTTTCTGCCACGATACTGAGAAAAGGTATATAATTCAACACCAATAAGATTGTAGGG
258 TCTTGAGTTTTT-TGCCACAATACTCAGAAAA-GTATATAATTCAACGCCAATAAGATTATAGGG
*
4811 TTTTTCACGCTTTTAATATCTTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACAA
321 TTTTTCACGCTTCTAATATCTTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACAA
* * *
4876 GATTCAGATGCTTGTAAAAGCAAATTCATAAATCGAATATGACTTGGAATTGGTTCGATGAATAT
386 GATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATAT
4941 AGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACACGTT
451 AGATATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACACGTT
** * *
5006 TATGGCCCAAAAAACGTGATGGTTAGTGCACGATTTCCGATAAAAATAGACCCGTAATTTTTTTC
516 TATGATCC-AAAAACGTGATGGTTAGTACACGATTTCCGATAAAAATAGACCCGAAATTTTTTTC
*
5071 TTCAACTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAAAAAAATTGTAGG
580 TTGAAC-TTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAAAAAAATTGTAGG
* *
5133 GTTTTTCACGCTTCTAATATCGTTTATTCATTTTTCCCGAAATAATTTCTAACTAAATGAAACAT
1 GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAATGAAACAA
* * * **
5198 GATTCAGATGGTCGTAAAAACAAATCCATAAATAGAATGCGACTAGGAATTGGTTCCATGATTAT
66 GATTCAGATGCTCGCAAAAACAAATCCATAAATCGAATGCGACTAGGAATTGGTTCCAT-AACAT
* *
5263 AGATATTTCGAAGAGACTTTCTGCTAAAAATCATGCAAATCTGAGCTGGAACCCCGAAACGCGTT
130 AGATATTTCGAAGAGACTTTCTGCTAAAAATCTTGCAAAACTGAGCTGGAACCCCGAAACGCGTT
* *
5328 TTTGGCCCAAAAACCGTAATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAATTTTTTTC
195 TTTAGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAATTTTTTT-
* *
5393 CTTGAGTTTTTTGCCACAATACTCAGAAAAATATATAATTCAACGCCAAAAAGATTATAGGGTTT
259 CTTGAGTTTTTTGCCACAATACTCAGAAAAGTATATAATTCAACGCCAATAAGATTATAGGGTTT
* * *
5458 TTCACGCTTCTAATATCGTTTTTCCATTTTTCCCGAAATAATTTCTAATTAAATCAAAACAAGAT
324 TTCACGCTTCTAATATCTTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACAAGAT
* * * *
5523 TCAGATGCTTGTAAAAGCGAATCCATAAATTGAATGTGACTAGGAATTGGTTTGACGAATATAGA
389 TCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATATAGA
* * * * * *
5588 TATTTCAAAGATACTTTCACCTAAAAATCATGAAAATCTTAGCTGGGACCCCGAAACGCGTTTTT
454 TATTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACACGTTTAT
* * *
5653 GATCTAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAATTT
519 GATCCAAAAA-CGTGATGGTTAGTACACGATTTCCGATAAAAATAGACCCGAAATTT
5710 CTAACTAAAT
Statistics
Matches: 2239, Mismatches: 229, Indels: 87
0.88 0.09 0.03
Matches are distributed among these distances:
639 85 0.04
640 162 0.07
641 211 0.09
642 110 0.05
643 8 0.00
644 255 0.11
645 138 0.06
646 878 0.39
647 265 0.12
648 122 0.05
649 5 0.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (640 bp):
GTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATAATTTCTAACTAAATGAAACAA
GATTCAGATGCTCGCAAAAACAAATCCATAAATCGAATGCGACTAGGAATTGGTTCCATAACATA
GATATTTCGAAGAGACTTTCTGCTAAAAATCTTGCAAAACTGAGCTGGAACCCCGAAACGCGTTT
TTAGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAACAGACCCGAAATTTTTTTCT
TGAGTTTTTTGCCACAATACTCAGAAAAGTATATAATTCAACGCCAATAAGATTATAGGGTTTTT
CACGCTTCTAATATCTTTTTTTCATTTTTCCCGAAATAATTTCTAATTAAATCGAAACAAGATTC
AGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGACTAGGAATTGGTTCGATGAATATAGATA
TTTCAAAGAGACTTTCAGCTAAAAATCATGCAAATCTGAGCTGGGACCCCGAAACACGTTTATGA
TCCAAAAACGTGATGGTTAGTACACGATTTCCGATAAAAATAGACCCGAAATTTTTTTCTTGAAC
TTTTTGCCACAATACTCAGAAAAAGTATATAATTCAACGCCAAAAAAATTGTAGG
Found at i:5870 original size:206 final size:208
Alignment explanation
Indices: 5497--5915 Score: 594
Period size: 206 Copynumber: 2.0 Consensus size: 208
5487 TTCCCGAAAT
* * * * * *
5497 AATTTCTAATTAAATCAAAACAAGATTCAGATGCTTGTAAAAGCGAATCCATAAATTGAATGTGA
1 AATTTCTAACTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCGAATGTAA
* * * * *
5562 CTAGGAATTGGTTTGACGAATATAGATATTTCAAAGATACTTTCACCTAAAAATCATGAAAATCT
66 ATAGGAATTGGTTCGACAAACATAGATATTTCAAAGAGACTTTCACCTAAAAATCATGAAAATCT
* * * * *
5627 TAGCTGGGACCCCGAAACGCGTTTTTGATCTAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
131 GAGCTGGAACCCCGAAACGCGTTTTTGACCCAAAAACCGTAATGGTTAGTACACGATTTCCGCTA
5692 AAAACAGACCCGA
196 AAAACAGACCCGA
* *
5705 AATTTCTAACTAAAT-GAAACAAGATTCTGATGCTCGTAAAAACAAATCCATAAATCGAATGTAA
1 AATTTCTAACTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCGAATGTAA
** *
5769 ATAGGAATT-GTTCG-CTAAACATAGATATTTCAAAGAGACTTTCTGCTAAAAATCTTGCAAAA-
66 ATAGGAATTGGTTCGAC-AAACATAGATATTTCAAAGAGACTTTCACCTAAAAATCATG-AAAAT
*
5831 CTGAGCTGGAACCCCGAAACGCGTTTTTGGCCCAAAAACCGTAATGGTTAGTACACGATTTCCGC
129 CTGAGCTGGAACCCCGAAACGCGTTTTTGACCCAAAAACCGTAATGGTTAGTACACGATTTCCGC
5896 TAAAAACAGACCCGA
194 TAAAAACAGACCCGA
5911 AATTT
1 AATTT
5916 TTTCCTTGAG
Statistics
Matches: 187, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
205 1 0.01
206 118 0.63
207 54 0.29
208 14 0.07
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (208 bp):
AATTTCTAACTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCGAATGTAA
ATAGGAATTGGTTCGACAAACATAGATATTTCAAAGAGACTTTCACCTAAAAATCATGAAAATCT
GAGCTGGAACCCCGAAACGCGTTTTTGACCCAAAAACCGTAATGGTTAGTACACGATTTCCGCTA
AAAACAGACCCGA
Found at i:7023 original size:648 final size:645
Alignment explanation
Indices: 5705--9003 Score: 4918
Period size: 648 Copynumber: 5.1 Consensus size: 645
5695 ACAGACCCGA
* * * *
5705 AATTTCTAACTAAAT-GAAACAAGATTCTGATGCTCGTAAAAACAAATCCATAAATCGAATGTAA
1 AATTTCTAACTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
* * * * * *
5769 ATAGGAATT-GTTCGCTAAACATAGATATTTCAAAGAGACTTTCTGCTAAAAATCTTGCAAAACT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * *
5833 GAGCTGGAACCCCGAAACGCGTTTTTGGCCCAAAAACCGTAATGGTTAGTACACGATTTCCGCTA
131 GAGCTGGGACCCCGAAACGCGTTTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGATA
* *
5898 AAAACAGACCCGAAATTTTTTCCTTGAGTTTTTTGCCAAAATACTCAG-AAAAAATATATAATTC
196 AAAACAGACCCGAAATTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAAATATATAATTC
*
5962 AACGCCAAAAAGATTATAGGGTTTTTCACGCTTCTAATATCGTTTT-TCCATTTTTCCCGAAATA
261 AACGCCAAAAAGATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTAT-CATTTTTCCCGAAATA
* * * *
6026 ATTTCTATTTAAATCAAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGAC
325 ATTTCTAATTAAATCGAAACAAGATTCAGATGGTTGTAAAA-AAAATCCATAAATCGAATGTGAC
* * * * * * *
6091 TAGGAATTAGTTCCATGACTGTAGATATTTCAAAGAGACTTTTTGCTAAAAGTCATGCAAATCTG
389 TAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAAACTG
* * * * *
6156 ATCTGGGACCCCGAAACACGTTTATGGCCCAAAAAACGTGATGGTTAGTACACGATTTCCGCTCA
454 AGCTGGGACCCCGAAACGCGTTTTTGG-CCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAA
*
6221 AAATAGACCCGGGAATTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGTATATAATTC
518 AAATAGACCCGAGAATTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGTATATAATTC
* *
6286 AATGCCAATAAGATTGTAGGGTTTTTCACGCTTCTAATATCTATTTTTCATTTTTCCCGAAAT
583 AACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCTATTTTTCATTTTTCCCGAAAT
* * * *
6349 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTATAAAAGCAAATCCATAAATAGAATGCGA
1 AATTTCTAACTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
* * * * *
6414 CTAGGAATTAGTTCCATGACTGTAGATATTTCAAAGAGACTTTTTGCTAAAAATCATGCAAATCT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* ** *
6479 GAGCTGGGACCCCGAAATGCGTTTTTGATCCAAAAACCGTGATGGTTAGTACACGATTTCCGTTA
131 GAGCTGGGACCCCGAAACGCGTTTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGATA
**
6544 AAAACAGACCCGAAATTTTTTTTCTTGAGGATTTTGCCACAATACTCAGAAAAAAAATATATAAT
196 AAAACAGACCCGAAA-TTTTTTTCTTGAGTTTTTTGCCACAATACTCAG-AAAAAAATATATAAT
* *
6609 TCAACGCCAATAAGATTGTAGGGTTTTTCACGCTTCTCATATCGTTTTATCATTTTTCCCGAAAT
259 TCAACGCCAAAAAGATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTATCATTTTTCCCGAAAT
* * * * *
6674 AATTTCTAATTAAATCGAAACAAGATACAGATGGTTGCAAAAAAAATCTATAAATCGAATGTAAA
324 AATTTCTAATTAAATCGAAACAAGATTCAGATGGTTGTAAAAAAAATCCATAAATCGAATGTGAC
* * *
6739 TAGGAATTGGTTCGATAAATATAGATATTTCAAAGAGACTTTCTCCTAAAAATCTTGCAAAACTG
389 TAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAAACTG
* * * *
6804 AGCTGGAACCCCGTAACGCATTTTTAGGCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTCA
454 AGCTGGGACCCCGAAACGCGTTTTT-GGCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAA
*
6869 AAATAGACCCGAGAATTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGGATATAATTC
518 AAATAGACCCGAGAATTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGTATATAATTC
6934 AACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCTATTTTTCATTTTTCCCGAAAT
583 AACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCTATTTTTCATTTTTCCCGAAAT
*
6997 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
1 AATTTCTAACTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
7062 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * * *
7127 GAGCTGGGACCCCGAAACACGTTTATGGCCCAAAAAACGTGATGGTTAGTGCACGATTTCCGATA
131 GAGCTGGGACCCCGAAACGCGTTTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGATA
* * *
7192 AAAATAGACCCGAAATTTTTTTCTTGAACTTTTTTGCCACAATACTCA-AAAAAAGTATATAATT
196 AAAACAGACCCGAAATTTTTTTCTTG-AGTTTTTTGCCACAATACTCAGAAAAAAATATATAATT
* * * *
7256 CAACGCCGAAAATATTGTAGGGTTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATA
260 CAACGCCAAAAAGATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTATCATTTTTCCCGAAATA
* * * *
7321 ATTTCTAACTAAAT-GAAA-AATGATTCAGATGGTCGTAAAAACAAATCCATAAATAGAATGCGA
325 ATTTCTAATTAAATCGAAACAA-GATTCAGATGGTTGTAAAAA-AAATCCATAAATCGAATGTGA
* * * *
7384 CTAGGAATTGGTTCCATGACTATAGATATTTCGAAGAGACTTTCTGCTAAAAATCATGCAAATCT
388 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAAACT
* * * *
7449 TAGCTGGGACCCCGAAACGCGTTTTTGACCCAAAAATCGTGATGGTTAGTAAACGATTTCCGCTA
453 GAGCTGGGACCCCGAAACGCGTTTTTG-GCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
* * *
7514 AAAACAGACCCGA-AATTTTTTTTCTT-GAGTTTTTTGCCACAATACTCAGAAAAAGTATATAAT
517 AAAATAGACCCGAGAA-TTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGTATATAAT
*
7577 TCAACGCCAAAAAAATTGTAGGGTTTTTCACGCTTCTAATATCTATTTTTCATTTTTCCCGAAAT
581 TCAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCTATTTTTCATTTTTCCCGAAAT
* * *
7642 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGGATATGA
1 AATTTCTAACTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
* *
7707 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCTTGCAAAACT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * ** *
7772 GAGCTGGAACCCCGAAATGCGTTTTTGATCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
131 GAGCTGGGACCCCGAAACGCGTTTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGATA
** *
7837 AAAACAGACCCGAAAATTTTTTTCTTGAGGATTTTGCCACAATACTAAG-AAAAAATATATAATT
196 AAAACAGACCCG-AAATTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAAATATATAATT
* * *
7901 CAACGTCAATAAGATTGTAGGGTTTTTCACGCTTCTCATATCGTTTTATCATTTTTCCCGAAATA
260 CAACGCCAAAAAGATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTATCATTTTTCCCGAAATA
* * * *
7966 ATTTCTAATTAAATCGAAACAAGATACAGATGGTTGCAAAAAAAAATCCATAAATCGAATGTAAA
325 ATTTCTAATTAAATCGAAACAAGATTCAGATGGTTG-TAAAAAAAATCCATAAATCGAATGTGAC
** * * * * *
8031 TAGGAATTGGTTCGACAAATATAAATATTTCAAAAAGTCTTTCTGCTAATAATCTTGCAAAACTG
389 TAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAAACTG
* *
8096 AGCTGGAACCCCGAAACGCGTTTTTATGCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAA
454 AGCTGGGACCCCGAAACGCGTTTTT-GGCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAA
*
8161 AAATAGACCCGAGAATTTTTTTTCTTAAATTTTTTTGCCACAATACTCCGAAAAAGTATATAATT
518 AAATAGACCCGAGAA-TTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGTATATAATT
* * *
8226 CAATGCCAATAAGATTGTAGGGTTTTTCACGCTTCTAATATCTATTTTTCATTTTTCCTGAAAT
582 CAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCTATTTTTCATTTTTCCCGAAAT
* *
8290 AATTTCAAACTAAATCAAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
1 AATTTCTAACTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
*
8355 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATTT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * * *
8420 GAGCTGGGACCCCGAAACACGTTTATGGCCCAAAAATCGTGATGGTTAGTGCACGATTTCCGATA
131 GAGCTGGGACCCCGAAACGCGTTTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGATA
* *
8485 AAAATAGACCCGAAATTTTTTTTCTTGAGTTTTTTGCCACAATACTCAG-AAAAAGTATATAATT
196 AAAACAGACCCGAAA-TTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAAATATATAATT
* *
8549 CAACGCCAAAAAAATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAATA
260 CAACGCCAAAAAGATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTATCATTTTTCCCGAAATA
* *
8614 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGAC
325 ATTTCTAATTAAATCGAAACAAGATTCAGATGGTTGTAAAA-AAAATCCATAAATCGAATGTGAC
8679 TAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATA-T
389 TAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAA-ACT
* * * * *
8743 GAGCTGGGACCCCGAAACACGTTTATGGCCCAAAAAGCGTGATGGTTAGTGCACGATTTCCGATA
453 GAGCTGGGACCCCGAAACGCGTTTTTGG-CCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
* * * *
8808 AAAATAGACACGA-ATATTTTTTTCTTGAACTTTTTTGCCACATTACTCAGAAAAAGTATATAAT
517 AAAATAGACCCGAGA-ATTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGTATATAAT
* *
8872 TCAACGCCAAAAAAATTATAGGGTTTTTCACGCTTCTAATATCGT-TTTTTCATTTTTCCCGAAA
581 TCAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATC-TATTTTTCATTTTTCCCGAAA
8936 T
645 T
* * * *
8937 AATTTCTAACTAAAT-GAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATTGAATGCGA
1 AATTTCTAACTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
9001 CTA
66 CTA
9004 AAAACTTACC
Statistics
Matches: 2390, Mismatches: 239, Indels: 50
0.89 0.09 0.02
Matches are distributed among these distances:
644 16 0.01
645 467 0.20
646 576 0.24
647 185 0.08
648 1031 0.43
649 114 0.05
650 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (645 bp):
AATTTCTAACTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
GAGCTGGGACCCCGAAACGCGTTTTTGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGATA
AAAACAGACCCGAAATTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAAATATATAATTC
AACGCCAAAAAGATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTATCATTTTTCCCGAAATAA
TTTCTAATTAAATCGAAACAAGATTCAGATGGTTGTAAAAAAAATCCATAAATCGAATGTGACTA
GGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAAACTGAG
CTGGGACCCCGAAACGCGTTTTTGGCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTAAAAA
TAGACCCGAGAATTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCAAC
GCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCTATTTTTCATTTTTCCCGAAAT
Found at i:7228 original size:323 final size:322
Alignment explanation
Indices: 5705--9003 Score: 4783
Period size: 323 Copynumber: 10.2 Consensus size: 322
5695 ACAGACCCGA
* * * * *
5705 AATTTCTAACTAAAT-GAAACAAGATTCTGATGCTCGTAAAAACAAATCCATAAATCGAATGTAA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
* * * * * *
5769 ATAGGAATT-GTTCGCTAAACATAGATATTTCAAAGAGACTTTCTGCTAAAAATCTTGCAAAACT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * *
5833 GAGCTGGAACCCCGAAACGCGTTTTTGGCCCAAAAACCGTAATGGTTAGTACACGATTTCCGCTA
131 GAGCTGGGACCCCGAAACGCGTTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
* * * *
5898 AAAACAGACCCGAAATTTTTTCCTTGAGTTTTTTGCCAAAATACTCAGAAAAAATATATAATTCA
196 AAAATAGACCCGAAATTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCA
* *
5963 ACGCCAA-AAAGATTATAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTCCCGAAAT
261 ACGCCAATAAA-ATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
* *
6025 AATTTCTATTTAAATCAAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
* * * * * *
6090 CTAGGAATTAGTTCCATGACTGTAGATATTTCAAAGAGACTTTTTGCTAAAAGTCATGCAAATCT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * * *
6155 GATCTGGGACCCCGAAACACGTTTATGGCCCAAAAAACGTGATGGTTAGTACACGATTTCCGCTC
131 GAGCTGGGACCCCGAAACGCGTTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
* * *
6220 AAAATAGACCCGGGAATTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGTATATAATT
196 AAAATAGACCC-GAAATTTTTTTCTT-GAGTTTTTTGCCACAATACTCAGAAAAAGTATATAATT
* *
6285 CAATGCCAATAAGATTGTAGGGTTTTTCACGCTTCTAATATC-TATTTTTCATTTTTCCCGAAAT
259 CAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGT-TTTTTCATTTTTCCCGAAAT
* * *
6349 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTATAAAAGCAAATCCATAAATAGAATGCGA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
* * * * *
6414 CTAGGAATTAGTTCCATGACTGTAGATATTTCAAAGAGACTTTTTGCTAAAAATCATGCAAATCT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * ** *
6479 GAGCTGGGACCCCGAAATGCGTTTTTGATCCAAAAACCGTGATGGTTAGTACACGATTTCCGTTA
131 GAGCTGGGACCCCGAAACGCGTTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
* ** *
6544 AAAACAGACCCGAAATTTTTTTTCTTGAGGATTTTGCCACAATACTCAGAAAAAAAATATATAAT
196 AAAATAGACCCGAAA-TTTTTTTCTTGAGTTTTTTGCCACAATACTCAG--AAAAAGTATATAAT
* * *
6609 TCAACGCCAATAAGATTGTAGGGTTTTTCACGCTTCTCATATCGTTTTATCATTTTTCCCGAAAT
258 TCAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
* * * * * *
6674 AATTTCTAATTAAATCGAAACAAGATACAGATGGTTGCAAAA-AAAATCTATAAATCGAATGTAA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
* * * * *
6738 ATAGGAATTGGTTCGATAAATATAGATATTTCAAAGAGACTTTCTCCTAAAAATCTTGCAAAACT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * * *
6803 GAGCTGGAACCCCGTAACGCATTTTTAGG-CCAAAAACCGTGATGGTTAGTACACGATTTCCGCT
131 GAGCTGGGACCCCGAAACGCGTTTAT-GGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCT
* * * *
6867 CAAAATAGACCCGAGAATTTTTTTCTTAAATTTTTTTGCCACAATACTCAGAAAAAGGATATAAT
195 AAAAATAGACCCGA-AATTTTTTTCTT-GAGTTTTTTGCCACAATACTCAGAAAAAGTATATAAT
6932 TCAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATC-TATTTTTCATTTTTCCCGAAA
258 TCAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGT-TTTTTCATTTTTCCCGAAA
6996 T
322 T
6997 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
7062 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * * *
7127 GAGCTGGGACCCCGAAACACGTTTATGGCCCAAAAAACGTGATGGTTAGTGCACGATTTCCGATA
131 GAGCTGGGACCCCGAAACGCGTTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
* *
7192 AAAATAGACCCGAAATTTTTTTCTTGAACTTTTTTGCCACAATACTCAAAAAAAGTATATAATTC
196 AAAATAGACCCGAAATTTTTTTCTTG-AGTTTTTTGCCACAATACTCAGAAAAAGTATATAATTC
* *
7257 AACGCCGAA-AATATTGTAGGGTTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
260 AACGCC-AATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
* * * * * *
7320 AATTTCTAACTAAAT-GAAA-AATGATTCAGATGGTCGTAAAAACAAATCCATAAATAGAATGCG
1 AATTTCTAATTAAATCGAAACAA-GATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTG
* * *
7383 ACTAGGAATTGGTTCCATGACTATAGATATTTCGAAGAGACTTTCTGCTAAAAATCATGCAAATC
65 ACTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATC
* * * * *
7448 TTAGCTGGGACCCCGAAACGCGTTTTTGACCCAAAAATCGTGATGGTTAGTAAACGATTTCCGCT
130 TGAGCTGGGACCCCGAAACGCGTTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCT
*
7513 AAAAACAGACCCGAAATTTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAGTATATAATT
195 AAAAATAGACCCGAAA-TTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAGTATATAATT
*
7578 CAACGCCAAAAAAATTGTAGGGTTTTTCACGCTTCTAATATC-TATTTTTCATTTTTCCCGAAAT
259 CAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGT-TTTTTCATTTTTCCCGAAAT
* *
7642 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGGATATGA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
* *
7707 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCTTGCAAAACT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * * **
7772 GAGCTGGAACCCCGAAATGCGTTTTTGATCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
131 GAGCTGGGACCCCGAAACGCGTTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
* ** * *
7837 AAAACAGACCCGAAAATTTTTTTCTTGAGGATTTTGCCACAATACTAAGAAAAAATATATAATTC
196 AAAATAGACCCG-AAATTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAGTATATAATTC
* * * *
7902 AACGTCAATAAGATTGTAGGGTTTTTCACGCTTCTCATATCGTTTTATCATTTTTCCCGAAAT
260 AACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
* * * ** *
7965 AATTTCTAATTAAATCGAAACAAGATACAGATGGTTGCAAAAAAAAATCCATAAATCGAATGTAA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
* ** * * * * * *
8030 ATAGGAATTGGTTCGACAAATATAAATATTTCAAAAAGTCTTTCTGCTAATAATCTTGCAAAACT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
*
8095 GAGCTGGAACCCCGAAACGCGTTTTTAT-G-CCAAAAACCGTGATGGTTAGTACACGATTTCCGC
131 GAGCTGGGACCCCGAAACGCG--TTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGC
* * *
8158 TAAAAATAGACCCGAGAATTTTTTTTCTTAAATTTTTTTGCCACAATACTCCGAAAAAGTATATA
194 TAAAAATAGACCCGA-AA-TTTTTTTCTT-GAGTTTTTTGCCACAATACTCAGAAAAAGTATATA
* * *
8223 ATTCAATGCCAATAAGATTGTAGGGTTTTTCACGCTTCTAATATC-TATTTTTCATTTTTCCTGA
256 ATTCAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGT-TTTTTCATTTTTCCCGA
8287 AAT
320 AAT
* * *
8290 AATTTCAAACTAAATCAAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
*
8355 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATTT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * * *
8420 GAGCTGGGACCCCGAAACACGTTTATGGCCCAAAAATCGTGATGGTTAGTGCACGATTTCCGATA
131 GAGCTGGGACCCCGAAACGCGTTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
8485 AAAATAGACCCGAAATTTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAGTATATAATTC
196 AAAATAGACCCGAAA-TTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAGTATATAATTC
*
8550 AACGCCAAAAAAATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
260 AACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
8613 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
*
8678 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATAT
66 CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
* * * *
8743 GAGCTGGGACCCCGAAACACGTTTATGGCCCAAAAAGCGTGATGGTTAGTGCACGATTTCCGATA
131 GAGCTGGGACCCCGAAACGCGTTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
* * *
8808 AAAATAGACACGAATATTTTTTTCTTGAACTTTTTTGCCACATTACTCAGAAAAAGTATATAATT
196 AAAATAGACCCGAA-ATTTTTTTCTTG-AGTTTTTTGCCACAATACTCAGAAAAAGTATATAATT
* *
8873 CAACGCCAAAAAAATTATAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
259 CAACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
* * * * *
8937 AATTTCTAACTAAAT-GAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATTGAATGCGA
1 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
9001 CTA
66 CTA
9004 AAAACTTACC
Statistics
Matches: 2692, Mismatches: 249, Indels: 73
0.89 0.08 0.02
Matches are distributed among these distances:
320 13 0.00
321 57 0.02
322 395 0.15
323 1091 0.41
324 732 0.27
325 403 0.15
326 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (322 bp):
AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAGCAAATCCATAAATCGAATGTGA
CTAGGAATTGGTTCGATGAATATAGATATTTCAAAGAGACTTTCTGCTAAAAATCATGCAAATCT
GAGCTGGGACCCCGAAACGCGTTTATGGCCCAAAAACCGTGATGGTTAGTACACGATTTCCGCTA
AAAATAGACCCGAAATTTTTTTCTTGAGTTTTTTGCCACAATACTCAGAAAAAGTATATAATTCA
ACGCCAATAAAATTGTAGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTCCCGAAAT
Done.