Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013556.1 Corchorus olitorius cultivar O-4 contig13589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49634

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
355--1592
323
3.9
322
88
3
1791
36
17
14
31
1.90
1317--1867
275
2.0
274
88
3
831
37
16
13
32
1.88
1591--2666
515
2.1
516
88
4
1638
34
17
14
32
1.90
2283--3065
194
4.0
194
83
3
896
34
17
16
31
1.92
2997--4036
323
3.2
324
86
4
1402
34
17
15
33
1.91
3841--4228
194
2.0
192
85
4
530
34
17
17
30
1.94
3194--4777
837
1.9
840
82
6
2037
34
17
15
32
1.91
4035--5142
324
3.4
318
80
8
1044
34
17
15
33
1.91
19535--19607
31
2.3
32
81
6
87
36
15
12
35
1.84
19824--19859
17
2.1
18
89
5
56
41
2
0
55
1.14
26880--26937
19
2.9
19
79
5
62
34
17
8
39
1.80
39358--39398
11
3.6
11
86
3
55
2
14
0
82
0.76
39356--39398
23
1.9
23
90
4
70
2
16
0
81
0.79
40979--41028
2
24.5
2
88
11
75
48
4
0
48
1.20
41278--41335
19
2.9
19
80
9
62
43
12
15
29
1.83
45726--45752
3
9.0
3
100
0
54
0
33
33
33
1.58
48474--48827
179
2.0
179
91
2
579
52
2
9
35
1.47
49235--49307
29
2.4
31
84
4
87
30
15
12
42
1.83

Tables:   1

The End!