Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013558.1 Corchorus olitorius cultivar O-4 contig13591, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20850
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:13757 original size:26 final size:27

Alignment explanation


    Indices: 13702--13772  Score: 81
    Period size: 26  Copynumber: 2.7  Consensus size: 27

      13692 TCACCTAGGG

                                       
      13702 GGGGCATTTTGGTCATTTCCACACTAA
          1 GGGGCATTTTGGTCATTTCCACACTAA

                *             *  * * * 
      13729 -GGGTATTTTGGTCATTTGCATATTCA
          1 GGGGCATTTTGGTCATTTCCACACTAA

                   *          
      13755 GGGGCATGTTGGTCATTT
          1 GGGGCATTTTGGTCATTT

      13773 TAAGTCCACT


Statistics
Matches: 36,  Mismatches: 7, Indels: 2
        0.80            0.16        0.04

Matches are distributed among these distances:
  26   21  0.58
  27   15  0.42

ACGTcount: A:0.18, C:0.15, G:0.27, T:0.39


Consensus pattern (27 bp):   
GGGGCATTTTGGTCATTTCCACACTAA
Done.