Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013563.1 Corchorus olitorius cultivar O-4 contig13596, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30924

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1000--1041
15
2.7
15
96
3
75
11
7
14
66
1.43
4094--4142
25
1.9
26
84
12
66
46
6
12
34
1.66
6352--6417
25
2.6
25
90
0
105
28
18
42
10
1.83
18555--18627
25
2.9
25
87
0
110
30
17
42
9
1.81
20307--20355
25
2.0
25
100
0
98
12
32
20
34
1.90
20352--20393
21
2.0
21
86
9
59
47
35
0
16
1.47
20850--20927
30
2.6
31
83
6
106
20
26
15
37
1.92
21238--21436
66
3.0
65
88
1
290
35
23
11
29
1.90
21682--21816
43
3.0
44
91
8
236
32
18
25
22
1.97
22713--22845
65
2.0
65
86
2
187
36
24
12
26
1.92
22964--23167
101
2.0
101
98
0
390
32
15
20
31
1.94
23422--23451
16
1.9
15
93
6
51
56
3
0
40
1.16
23665--23745
22
3.5
24
70
23
75
38
2
2
56
1.26
23695--23743
25
2.0
25
84
8
64
38
0
2
59
1.09
26017--26106
41
2.2
41
97
0
171
27
17
10
44
1.81
27835--27971
16
8.6
16
75
15
113
31
34
24
10
1.89
27835--27949
32
3.6
32
88
2
160
30
36
23
9
1.87
27835--27971
48
2.9
48
77
14
129
31
34
24
10
1.89
28454--28535
42
2.0
42
95
0
146
40
17
3
39
1.67
28735--28816
16
5.2
15
76
14
76
37
36
15
9
1.81
28735--28812
31
2.5
32
89
2
113
38
35
15
10
1.81
29766--30013
124
2.0
123
79
5
268
50
3
10
36
1.54

Tables:   1

The End!