Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001357.1 Corchorus olitorius cultivar O-4 contig01357, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39


Found at i:1005 original size:58 final size:58

Alignment explanation


    Indices: 910--1024  Score: 151
    Period size: 58  Copynumber: 2.0  Consensus size: 58

        900 ATTAATCAAA

                                        *                 *           
        910 TATCAAGTGACATGTTCTTTATTAGATGTATAAAAAAAGAAGTTTTCGGACCAAGACT
          1 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGAAGTTTTAGGACCAAGACT

                *            *            *          *           *    
        968 TATCGAGTGACATGTTTTTTTATTAGATGCCT-AAAAAAGACGTTTTAGGACCGAGAC
          1 TATCAAGTGACATG-TTCTTTATTAGATGCATAAAAAAAGAAGTTTTAGGACCAAGAC

       1025 ATGATGCTAT


Statistics
Matches: 49,  Mismatches: 7, Indels: 2
        0.84            0.12        0.03

Matches are distributed among these distances:
  58   35  0.71
  59   14  0.29

ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33


Consensus pattern (58 bp):   
TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGAAGTTTTAGGACCAAGACT
Done.