Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013571.1 Corchorus olitorius cultivar O-4 contig13604, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25372

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
801--1022
4
57.0
4
67
18
103
27
7
0
65
1.18
802--1040
46
5.3
46
90
4
314
26
7
0
64
1.24
821--1040
44
5.0
44
92
3
329
26
7
0
65
1.23
843--1014
19
9.1
19
71
18
101
27
8
0
64
1.21
1062--1122
24
2.5
24
84
5
79
22
18
1
57
1.49
2306--2364
22
2.7
22
97
0
109
33
10
15
40
1.81
2439--2483
22
2.0
22
82
0
54
37
11
17
33
1.85
3234--3276
3
14.3
3
100
0
86
0
67
0
32
0.91
4840--4868
3
9.7
3
100
0
58
31
0
0
68
0.89
10172--10204
6
5.5
6
100
0
66
15
0
51
33
1.43
13966--13995
2
15.0
2
92
0
51
50
3
0
46
1.18
14134--14193
31
1.9
31
100
0
120
35
23
3
38
1.71
14231--14494
94
2.8
93
91
1
411
32
12
1
52
1.50
14454--14561
52
2.1
52
100
0
216
34
9
1
54
1.43
21950--22198
21
11.9
21
81
4
288
28
12
24
34
1.92
21946--22198
42
6.0
42
90
2
375
29
12
23
33
1.92
22294--22354
21
2.9
21
87
2
86
40
18
9
31
1.83
22660--22711
21
2.5
21
71
6
52
42
25
7
25
1.81
23091--23131
20
2.0
20
86
9
57
41
4
4
48
1.46
23701--23732
16
2.0
16
100
0
64
37
0
6
56
1.25

Tables:   1

The End!