Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013574.1 Corchorus olitorius cultivar O-4 contig13607, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3850
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35


Found at i:3157 original size:19 final size:19

Alignment explanation


    Indices: 3133--3169  Score: 74
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       3123 ACTTTGCGTA

                               
       3133 AGTTCAATTCAACTAACTC
          1 AGTTCAATTCAACTAACTC

                              
       3152 AGTTCAATTCAACTAACT
          1 AGTTCAATTCAACTAACT

       3170 TCCAAAATCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.38, C:0.24, G:0.05, T:0.32


Consensus pattern (19 bp):   
AGTTCAATTCAACTAACTC
Done.