Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013576.1 Corchorus olitorius cultivar O-4 contig13609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26468

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2300--2341
21
2.0
21
90
9
68
30
23
9
35
1.87
2754--2792
17
2.3
17
81
0
51
38
7
7
46
1.61
4314--4461
66
2.3
66
83
5
185
38
16
22
22
1.93
4314--4741
68
6.5
66
73
12
249
40
15
20
22
1.90
4502--4735
129
1.8
129
83
1
317
41
16
20
22
1.90
5557--5593
15
2.5
15
95
0
65
35
45
0
18
1.50
9790--9814
2
12.5
2
100
0
50
52
0
0
48
1.00
10200--10227
1
28.0
1
100
0
56
0
0
0
100
0.00
16048--16088
21
2.0
21
85
9
57
21
21
7
48
1.74
26295--26343
2
24.5
2
100
0
98
0
0
48
51
1.00

Tables:   1

The End!