Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013585.1 Corchorus olitorius cultivar O-4 contig13618, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3394
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38


Found at i:3262 original size:19 final size:18

Alignment explanation


    Indices: 3230--3266  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

       3220 TTCGTCTCCA

                     *        
       3230 TTTCTTTTCTCTCATCTT
          1 TTTCTTTTCCCTCATCTT

                               
       3248 TTTCTCTTTCCCTCATCTT
          1 TTTCT-TTTCCCTCATCTT

       3267 CAATATCTCC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    5  0.29
  19   12  0.71

ACGTcount: A:0.05, C:0.32, G:0.00, T:0.62


Consensus pattern (18 bp):   
TTTCTTTTCCCTCATCTT
Done.