Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013588.1 Corchorus olitorius cultivar O-4 contig13621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10459
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31


Found at i:10085 original size:48 final size:46

Alignment explanation


    Indices: 10027--10135  Score: 137
    Period size: 48  Copynumber: 2.3  Consensus size: 46

      10017 AAGGAACAAT

                                   ***                       
      10027 AAAAAGTAAAAGATTAATTTTATCTTAAAAATTGAGAAAAAGTGCAAGG
          1 AAAAA-TAAAAGATTAATTTTATAGCAAAAATTGAGAAAAAGTGC-A-G

                         *      *                         
      10076 AAAAATAAAAGATAAATTTTGTAGCAAAAATTGAGAAAAAGTGCAG
          1 AAAAATAAAAGATTAATTTTATAGCAAAAATTGAGAAAAAGTGCAG

                *         
      10122 AAAAGTAAAAGATT
          1 AAAAATAAAAGATT

      10136 GCTTTAAGTG


Statistics
Matches: 53,  Mismatches: 7, Indels: 3
        0.84            0.11        0.05

Matches are distributed among these distances:
  46   13  0.25
  47    1  0.02
  48   34  0.64
  49    5  0.09

ACGTcount: A:0.56, C:0.04, G:0.17, T:0.24


Consensus pattern (46 bp):   
AAAAATAAAAGATTAATTTTATAGCAAAAATTGAGAAAAAGTGCAG
Done.